Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 6 curated entries in PaperBLAST's database that match '4.1.1.44'.

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_3239: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
is similar to:
PaperBLAST

Q6SJA7: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sulfitobacter sp.

42% id,
97% cov

Q6SJB9: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Ruegeria pomeroyi

40% id,
99% cov

Q9L5B1: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sagittula stellata

40% id,
92% cov

More...

Pf1N1B4_1105: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
is similar to:
PaperBLAST

Q6SJB9: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Ruegeria pomeroyi

41% id,
98% cov

Q6SJA7: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sulfitobacter sp.

40% id,
97% cov

Q9L5B1: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sagittula stellata

39% id,
91% cov

More...

Pf1N1B4_3238: Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)
is similar to:
PaperBLAST

Q0SH24: 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Rhodococcus jostii

47% id,
63% cov

Pf1N1B4_4968: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
is similar to:
PaperBLAST

Q6SJC5: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Roseovarius nubinhibens

27% id,
97% cov

Q6SJB9: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Ruegeria pomeroyi

25% id,
96% cov

Q9L5B1: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sagittula stellata

32% id,
69% cov

More...

Pf1N1B4_549: Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)
is similar to:
PaperBLAST

Q0SH24: 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Rhodococcus jostii

32% id,
60% cov

Pf1N1B4_213: Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24)
is similar to:
PaperBLAST

Q0SH24: 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Rhodococcus jostii

31% id,
59% cov

Pf1N1B4_1556: Poly(3-hydroxyalkanoate) depolymerase
is similar to:
PaperBLAST

Q0SH24: 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Rhodococcus jostii

28% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory