Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 88 curated entries in PaperBLAST's database that match '4.1.2.4'.

These curated entries have 56 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_2451: Low-specificity L-threonine aldolase (EC 4.1.2.48)
is similar to:
PaperBLAST

O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.

89% id,
100% cov

A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris

39% id,
93% cov

O13427: low-specificity L-threonine aldolase (EC 4.1.2.48) from Candida albicans

27% id,
79% cov

Pf1N1B4_2778: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

73% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

61% id,
94% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

37% id,
93% cov

Pf1N1B4_2454: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

71% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

61% id,
94% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

37% id,
86% cov

Pf1N1B4_2161: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

66% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

58% id,
94% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

37% id,
93% cov

Pf1N1B4_3449: Low-specificity L-threonine aldolase (EC 4.1.2.48)
is similar to:
PaperBLAST

LTAA_AERJA / O07051: L-allo-threonine aldolase; L-allo-TA; L-allo-threonine acetaldehyde-lyase; EC 4.1.2.49 from Aeromonas jandaei
ltaA / O07051: L-allo-threonine aldolase subunit (EC 4.1.2.48) from Aeromonas jandaei
O07051: L-allo-threonine aldolase (EC 4.1.2.49) from Aeromonas jandaei

60% id,
99% cov

LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli
LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
ltaE / P75823: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.26) from Escherichia coli
P75823: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

57% id,
99% cov

THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana

44% id,
98% cov

More...

Pf1N1B4_2402: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
is similar to:
PaperBLAST

KBAY_ECOLI / P0AB74: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
Kba / b3137: tagatose-1,6-bisphosphate aldolase 1 (EC 4.1.2.40) from Escherichia coli
kbaY / RF|NP_417606: tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
kbaY / P0AB76: D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) from Escherichia coli
kbaY / P0AB74: tagatose-1,6-bisphosphate aldolase 1 (EC 4.1.2.40) from Escherichia coli

34% id,
100% cov

KBAY_ECOLX / Q9KIP8: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli

34% id,
100% cov

GATY_ECOLX / P0C8J7: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli

32% id,
100% cov

More...

Pf1N1B4_3108: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

34% id,
83% cov

Pf1N1B4_3332: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)
is similar to:
PaperBLAST

NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum
Q9X9Q6: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Sphingobium xenophagum

26% id,
93% cov

NAHE1_PSEPU / Q51947: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Pseudomonas putida
Q51947: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida

26% id,
87% cov

nahE / P0A144: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida

26% id,
86% cov

Pf1N1B4_4210: Type III PLP / low-specificity D-threonine aldolase
is similar to:
PaperBLAST

A0A1C9ZZ39: D-threonine aldolase (EC 4.1.2.42) from Chlamydomonas reinhardtii

28% id,
80% cov

Pf1N1B4_4176: Alcohol dehydrogenase (EC 1.1.1.1)
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

24% id,
73% cov

Pf1N1B4_395: Alcohol dehydrogenase (EC 1.1.1.1)
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

24% id,
52% cov

Pf1N1B4_1714: Methionine ABC transporter substrate-binding protein
is similar to:
PaperBLAST

HPS_METAM / Q48907: 3-hexulose-6-phosphate synthase; HPS; D-arabino-3-hexulose-6-phosphate formaldehyde lyase; EC 4.1.2.43 from Methylomonas aminofaciens

24% id,
50% cov

Q9F6B7: 3-hexulose-6-phosphate synthase (EC 4.1.2.43)

28% id,
32% cov

Pf1N1B4_1864: Methionine ABC transporter substrate-binding protein
is similar to:
PaperBLAST

Q9F6B7: 3-hexulose-6-phosphate synthase (EC 4.1.2.43)

31% id,
39% cov

HPS_METAM / Q48907: 3-hexulose-6-phosphate synthase; HPS; D-arabino-3-hexulose-6-phosphate formaldehyde lyase; EC 4.1.2.43 from Methylomonas aminofaciens

28% id,
42% cov

Pf1N1B4_590: Phosphogluconate repressor HexR, RpiR family
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

26% id,
42% cov

Pf1N1B4_3796: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
is similar to:
PaperBLAST

BOXC_AROEV / Q84HH6: Benzoyl-CoA-dihydrodiol lyase; EC 4.1.2.44 from Aromatoleum evansii
boxC / Q84HH6: benzoyl-CoA-dihydrodiol lyase monomer (EC 4.1.2.44) from Aromatoleum evansii
Q84HH6: 2,3-epoxybenzoyl-CoA dihydrolase (EC 4.1.2.44) from Azoarcus evansii

26% id,
42% cov

Pf1N1B4_1075: Arabinose 5-phosphate isomerase (EC 5.3.1.13)
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

29% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory