Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)
Found 59 curated entries in PaperBLAST's database that match '4.1.3.4'.
These curated entries have 34 distinct sequences.
Running ublast with E ≤ 0.01
Found 8 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query
Pf1N1B4_3990: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) is similar to: | PaperBLAST |
LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa | 78% id, 100% cov |
mvaB / GB|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii | 60% id, 97% cov |
SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti | 57% id, 97% cov |
Pf1N1B4_587: 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is similar to: | PaperBLAST |
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli | 46% id, 94% cov |
Pf1N1B4_5615: Citrate lyase beta chain (EC 4.1.3.6) is similar to: | PaperBLAST |
A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus | 31% id, 92% cov |
Pf1N1B4_399: 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) is similar to: | PaperBLAST |
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli | 31% id, 77% cov |
Pf1N1B4_3985: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) is similar to: | PaperBLAST |
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans | 31% id, 41% cov |
Pf1N1B4_2011: Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) is similar to: | PaperBLAST |
tesG / Q83VZ3: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Comamonas testosteroni | 28% id, 45% cov |
Pf1N1B4_5593: 4-hydroxycinnamoyl CoA hydratase/lyase (Enoyl-CoA hydratase/lyase) (EC 4.2.1.17) is similar to: | PaperBLAST |
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans | 25% id, 41% cov |
Pf1N1B4_3273: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) is similar to: | PaperBLAST |
CCL_CHLAA / A9WGE2: (R)-citramalyl-CoA lyase; EC 4.1.3.46 from Chloroflexus aurantiacus | 55% id, 17% cov |
mvaB / GB|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii | 38% id, 24% cov |
HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus | 60% id, 13% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
468750-469409 (frame -1) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon is similar to: | PaperBLAST |
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli | 30% id, 80% cov |
Lawrence Berkeley National Laboratory