Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 67 curated entries in PaperBLAST's database that match '4.2.1.10' as complete word(s).

These curated entries have 49 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1307: 3-dehydroquinate dehydratase II (EC 4.2.1.10)
is similar to:
PaperBLAST

O30557: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Pseudomonas aeruginosa

93% id,
99% cov

Q0VMZ2: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Alcanivorax borkumensis

78% id,
91% cov

Q9PH97: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Xylella fastidiosa

66% id,
97% cov

More...

Pf1N1B4_2750: 3-dehydroquinate dehydratase II (EC 4.2.1.10)
is similar to:
PaperBLAST

O30557: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Pseudomonas aeruginosa

60% id,
97% cov

N1V364: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arthrobacter crystallopoietes

63% id,
90% cov

I0L192: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Micromonospora lupini

58% id,
97% cov

More...

Pf1N1B4_2749: Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25)
is similar to:
PaperBLAST

Q6PUG0: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

32% id,
52% cov

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

33% id,
44% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

31% id,
10% cov

Pf1N1B4_3930: Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25)
is similar to:
PaperBLAST

Q6PUG0: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

27% id,
55% cov

Q6PUF9: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

30% id,
49% cov

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

28% id,
43% cov

Pf1N1B4_836: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Atopobium rimae

29% id,
40% cov

Pf1N1B4_1537: 3-dehydroquinate synthase (EC 4.2.3.4)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

37% id,
22% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

36% id,
23% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

33% id,
10% cov

Pf1N1B4_2918: Glutamyl-tRNA reductase (EC 1.2.1.70)
is similar to:
PaperBLAST

Q6PUF9: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

28% id,
19% cov

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

36% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3089062-3090033 (frame -3) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Q6PUG0: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum
Also see hits to annotated proteins above

31% id,
54% cov

4367475-4368353 (frame +3) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Q6PUF9: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum
Also see hits to annotated proteins above

29% id,
53% cov

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana
Also see hits to annotated proteins above

27% id,
51% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory