Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)
Found 53 curated entries in PaperBLAST's database that match '4.2.1.12'.
These curated entries have 33 distinct sequences.
Running ublast with E ≤ 0.01
Found 6 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query
| Pf1N1B4_601: Phosphogluconate dehydratase (EC 4.2.1.12) is similar to: | PaperBLAST |
Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis | 93% id, 100% cov |
EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli | 64% id, 100% cov |
EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis | 58% id, 99% cov |
| Pf1N1B4_1831: Tryptophan synthase beta chain (EC 4.2.1.20) is similar to: | PaperBLAST |
trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima | 62% id, 98% cov |
trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis | 62% id, 97% cov |
TSB1 / P14671: tryptophan synthase, beta subunit (EC 4.2.1.122) from Arabidopsis thaliana | 64% id, 84% cov |
| Pf1N1B4_2303: Dihydroxy-acid dehydratase (EC 4.2.1.9) is similar to: | PaperBLAST |
Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis | 30% id, 89% cov |
EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis | 29% id, 88% cov |
EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli | 29% id, 57% cov |
| Pf1N1B4_4621: L-arabonate dehydratase (EC 4.2.1.25) is similar to: | PaperBLAST |
EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli | 28% id, 88% cov |
EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis | 29% id, 82% cov |
| Pf1N1B4_1830: Tryptophan synthase alpha chain (EC 4.2.1.20) is similar to: | PaperBLAST |
A0A2U8JPY3: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis | 35% id, 39% cov |
| Pf1N1B4_2280: Threonine dehydratase biosynthetic (EC 4.3.1.19) is similar to: | PaperBLAST |
A0A2U8JPY3: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis | 25% id, 35% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 6 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory