Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)
Found 7 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).
These curated entries have 4 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query
| Pf1N1B4_1107: D-galactarate dehydratase (EC 4.2.1.42) is similar to: | PaperBLAST |
PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae | 96% id, 100% cov |
HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae | 67% id, 99% cov |
GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli | 62% id, 99% cov |
| Pf1N1B4_5693: Gluconate dehydratase (EC 4.2.1.39) is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 29% id, 87% cov |
| Pf1N1B4_3383: Mandelate racemase (EC 5.1.2.2) is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 29% id, 81% cov |
| Pf1N1B4_398: Galactonate dehydratase (EC 4.2.1.6) is similar to: | PaperBLAST |
TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium | 29% id, 74% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory