Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 52 curated entries in PaperBLAST's database that match '4.2.1.6'.

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_398: Galactonate dehydratase (EC 4.2.1.6)
is similar to:
PaperBLAST

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

79% id,
100% cov

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli
Q6BF17: galactonate dehydratase (EC 4.2.1.6) from Escherichia coli

62% id,
100% cov

G3YE52: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

50% id,
100% cov

More...

Pf1N1B4_4621: L-arabonate dehydratase (EC 4.2.1.25)
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

65% id,
98% cov

Pf1N1B4_4710: Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine
is similar to:
PaperBLAST

NRL4_ARATH / P46011: Bifunctional nitrilase/nitrile hydratase NIT4; Cyanoalanine nitrilase; Nitrilase 4; EC 3.5.5.1; EC 3.5.5.4; EC 4.2.1.65 from Arabidopsis thaliana

51% id,
83% cov

NRL4A_LUPAN / Q5QGZ8: Bifunctional nitrilase/nitrile hydratase NIT4A; LaNIT4A; 3-cyanoalanine hydratase; Cyanoalanine nitrilase A; EC 3.5.5.4; EC 4.2.1.65 from Lupinus angustifolius
NIT4A / Q5QGZ8: β-cyano-L-alanine nitrilase (EC 3.5.5.4; EC 4.2.1.65) from Lupinus angustifolius
Q5QGZ8: cyanoalanine nitrilase (EC 3.5.5.4); 3-Cyanoalanine hydratase (EC 4.2.1.65) from Lupinus angustifolius

50% id,
84% cov

NRL4A_TOBAC / Q42965: Bifunctional nitrilase/nitrile hydratase NIT4A; TNIT4A; 3-cyanoalanine hydratase; Cyanoalanine nitrilase A; Nitrilase 4A; EC 3.5.5.1; EC 3.5.5.4; EC 4.2.1.65 from Nicotiana tabacum

52% id,
80% cov

More...

Pf1N1B4_1107: D-galactarate dehydratase (EC 4.2.1.42)
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

30% id,
92% cov

Pf1N1B4_3383: Mandelate racemase (EC 5.1.2.2)
is similar to:
PaperBLAST

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

31% id,
89% cov

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli
Q6BF17: galactonate dehydratase (EC 4.2.1.6) from Escherichia coli

30% id,
91% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus

29% id,
86% cov

More...

Pf1N1B4_601: Phosphogluconate dehydratase (EC 4.2.1.12)
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

31% id,
84% cov

Pf1N1B4_3095: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabZ form (EC 4.2.1.59)
is similar to:
PaperBLAST

fabZ: beta-hydroxyacyl-acyl carrier protein dehydratase; EC 4.2.1.60 from Toxoplasma gondii

44% id,
58% cov

Pf1N1B4_5805: Muconate cycloisomerase (EC 5.5.1.1)
is similar to:
PaperBLAST

G3YE52: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

27% id,
89% cov

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli
Q6BF17: galactonate dehydratase (EC 4.2.1.6) from Escherichia coli

25% id,
91% cov

G3Y8T6: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

27% id,
74% cov

More...

Pf1N1B4_5693: Gluconate dehydratase (EC 4.2.1.39)
is similar to:
PaperBLAST

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

34% id,
70% cov

G3YE52: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

31% id,
70% cov

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus

25% id,
86% cov

More...

Pf1N1B4_1093: FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog)
is similar to:
PaperBLAST

NRL4A_TOBAC / Q42965: Bifunctional nitrilase/nitrile hydratase NIT4A; TNIT4A; 3-cyanoalanine hydratase; Cyanoalanine nitrilase A; Nitrilase 4A; EC 3.5.5.1; EC 3.5.5.4; EC 4.2.1.65 from Nicotiana tabacum

27% id,
79% cov

NRL4_ARATH / P46011: Bifunctional nitrilase/nitrile hydratase NIT4; Cyanoalanine nitrilase; Nitrilase 4; EC 3.5.5.1; EC 3.5.5.4; EC 4.2.1.65 from Arabidopsis thaliana

26% id,
77% cov

NRL4B_LUPAN / Q3LRV4: Bifunctional nitrilase/nitrile hydratase NIT4B; LaNIT4B; 3-cyanoalanine hydratase; Cyanoalanine nitrilase B; EC 3.5.5.4; EC 4.2.1.65 from Lupinus angustifolius
NIT4B / Q3LRV4: β-cyano-L-alanine nitrilase (EC 3.5.5.4; EC 4.2.1.65) from Lupinus angustifolius

26% id,
79% cov

More...

Pf1N1B4_5057: mandelate racemase family protein Pfl_3283
is similar to:
PaperBLAST

G3YE52: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

22% id,
90% cov

G3Y8T6: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

25% id,
73% cov

Pf1N1B4_2303: Dihydroxy-acid dehydratase (EC 4.2.1.9)
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

32% id,
61% cov

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

35% id,
39% cov

Pf1N1B4_5621: Hydrolase, carbon-nitrogen family
is similar to:
PaperBLAST

NRL4B_LUPAN / Q3LRV4: Bifunctional nitrilase/nitrile hydratase NIT4B; LaNIT4B; 3-cyanoalanine hydratase; Cyanoalanine nitrilase B; EC 3.5.5.4; EC 4.2.1.65 from Lupinus angustifolius
NIT4B / Q3LRV4: β-cyano-L-alanine nitrilase (EC 3.5.5.4; EC 4.2.1.65) from Lupinus angustifolius

24% id,
76% cov

NRL4_ARATH / P46011: Bifunctional nitrilase/nitrile hydratase NIT4; Cyanoalanine nitrilase; Nitrilase 4; EC 3.5.5.1; EC 3.5.5.4; EC 4.2.1.65 from Arabidopsis thaliana

28% id,
51% cov

NRL4A_LUPAN / Q5QGZ8: Bifunctional nitrilase/nitrile hydratase NIT4A; LaNIT4A; 3-cyanoalanine hydratase; Cyanoalanine nitrilase A; EC 3.5.5.4; EC 4.2.1.65 from Lupinus angustifolius
NIT4A / Q5QGZ8: β-cyano-L-alanine nitrilase (EC 3.5.5.4; EC 4.2.1.65) from Lupinus angustifolius
Q5QGZ8: cyanoalanine nitrilase (EC 3.5.5.4); 3-Cyanoalanine hydratase (EC 4.2.1.65) from Lupinus angustifolius

25% id,
53% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5206660-5207823 (frame +1) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

NRL4_ARATH / P46011: Bifunctional nitrilase/nitrile hydratase NIT4; Cyanoalanine nitrilase; Nitrilase 4; EC 3.5.5.1; EC 3.5.5.4; EC 4.2.1.65 from Arabidopsis thaliana
Also see hits to annotated proteins above

48% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory