Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 6 curated entries in PaperBLAST's database that match '4.2.1.68' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1107: D-galactarate dehydratase (EC 4.2.1.42)
is similar to:
PaperBLAST

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans

30% id,
92% cov

Pf1N1B4_3383: Mandelate racemase (EC 5.1.2.2)
is similar to:
PaperBLAST

FUCD_XANCP / Q8P3K2: L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris

27% id,
72% cov

G3Y683: L-fuconate dehydratase (EC 4.2.1.68) from Aspergillus niger

26% id,
52% cov

ENOF1_HUMAN / Q7L5Y1: Mitochondrial enolase superfamily member 1; Antisense RNA to thymidylate synthase; rTS; L-fuconate dehydratase; EC 4.2.1.68 from Homo sapiens

30% id,
36% cov

More...

Pf1N1B4_5693: Gluconate dehydratase (EC 4.2.1.39)
is similar to:
PaperBLAST

FUCD_XANCP / Q8P3K2: L-fuconate dehydratase; FucD; EC 4.2.1.68 from Xanthomonas campestris

32% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory