Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 17 curated entries in PaperBLAST's database that match '4.2.1.82' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_4621: L-arabonate dehydratase (EC 4.2.1.25)
is similar to:
PaperBLAST

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

44% id,
100% cov

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

43% id,
100% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

42% id,
100% cov

More...

Pf1N1B4_398: Galactonate dehydratase (EC 4.2.1.6)
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

36% id,
97% cov

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

31% id,
89% cov

Pf1N1B4_3383: Mandelate racemase (EC 5.1.2.2)
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

28% id,
88% cov

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

27% id,
84% cov

Pf1N1B4_2303: Dihydroxy-acid dehydratase (EC 4.2.1.9)
is similar to:
PaperBLAST

YJHG_ECOLI / P39358: D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli
YjhG / b4297: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yjhG / P39358: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
P39358: xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

31% id,
80% cov

YAGF_ECOLI / P77596: D-xylonate dehydratase YagF; EC 4.2.1.82 from Escherichia coli
YagF / b0269: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yagF / P77596: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

30% id,
79% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

33% id,
59% cov

More...

Pf1N1B4_601: Phosphogluconate dehydratase (EC 4.2.1.12)
is similar to:
PaperBLAST

YAGF_ECOLI / P77596: D-xylonate dehydratase YagF; EC 4.2.1.82 from Escherichia coli
YagF / b0269: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yagF / P77596: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

30% id,
79% cov

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

27% id,
84% cov

YJHG_ECOLI / P39358: D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli
YjhG / b4297: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yjhG / P39358: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
P39358: xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

29% id,
75% cov

More...

Pf1N1B4_5805: Muconate cycloisomerase (EC 5.5.1.1)
is similar to:
PaperBLAST

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

26% id,
88% cov

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

23% id,
87% cov

Pf1N1B4_5693: Gluconate dehydratase (EC 4.2.1.39)
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

26% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory