Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 15 curated entries in PaperBLAST's database that match '4.2.1.9' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_2303: Dihydroxy-acid dehydratase (EC 4.2.1.9)
is similar to:
PaperBLAST

ILVD_RHIL3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium leguminosarum

76% id,
99% cov

ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli
IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli
ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli

75% id,
100% cov

ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides

72% id,
100% cov

More...

Pf1N1B4_4621: L-arabonate dehydratase (EC 4.2.1.25)
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

39% id,
95% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

39% id,
94% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

35% id,
96% cov

More...

Pf1N1B4_601: Phosphogluconate dehydratase (EC 4.2.1.12)
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

32% id,
99% cov

ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli
IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli
ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli

30% id,
99% cov

ILVD_RHIL3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium leguminosarum

31% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory