Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 590 curated entries in PaperBLAST's database that match '4.2.3.1'.

These curated entries have 408 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_3014: Threonine synthase (EC 4.2.3.1)
is similar to:
PaperBLAST

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

58% id,
100% cov

Q2SWH9: threonine synthase (EC 4.2.3.1) from Burkholderia thailandensis

44% id,
99% cov

THRC_CORGL / P23669: Threonine synthase; TS; EC 4.2.3.1 from Corynebacterium glutamicum

44% id,
98% cov

More...

Pf1N1B4_1663: 4-aminobutyrate aminotransferase (EC 2.6.1.19)
is similar to:
PaperBLAST

AT2L2_HUMAN / Q8IUZ5: 5-phosphohydroxy-L-lysine phospho-lyase; Alanine--glyoxylate aminotransferase 2-like 2; EC 4.2.3.134 from Homo sapiens
Q8IUZ5: 5-phosphonooxy-L-lysine phospho-lyase (EC 4.2.3.134) from Homo sapiens

39% id,
97% cov

Pf1N1B4_1537: 3-dehydroquinate synthase (EC 4.2.3.4)
is similar to:
PaperBLAST

EVS_ACTMD / C6WFL3: 2-epi-valiolone synthase; EVS; Sedoheptulose 7-phosphate cyclase; EC 4.2.3.155 from Actinosynnema mirum
Amir_2000 / C6WFL3: 2-epi-valiolone synthase (EC 4.2.3.155) from Actinosynnema mirum
C6WFL3: 2-epi-valiolone synthase (EC 4.2.3.155) from Actinosynnema mirum

36% id,
92% cov

EVS_STIAD / Q08VU0: 2-epi-valiolone synthase; EVS; Sedoheptulose 7-phosphate cyclase; EC 4.2.3.155 from Stigmatella aurantiaca
Q08VU0: 2-epi-valiolone synthase (EC 4.2.3.155) from Stigmatella aurantiaca

36% id,
86% cov

DOIS_STRSD / Q2MF16: 2-deoxy-scyllo-inosose synthase; DOI synthase; DOIS; EC 4.2.3.124 from Streptoalloteichus tenebrarius
Q2MF16: 2-deoxy-scyllo-inosose synthase (EC 4.2.3.124) from Streptoalloteichus tenebrarius

34% id,
91% cov

More...

Pf1N1B4_110: Queuosine biosynthesis QueD, PTPS-I
is similar to:
PaperBLAST

PTPS_MOUSE / Q9R1Z7: 6-pyruvoyl tetrahydrobiopterin synthase; PTP synthase; PTPS; EC 4.2.3.12 from Mus musculus

34% id,
88% cov

P27213: 6-pyruvoyltetrahydropterin synthase (EC 4.2.3.12) from Rattus norvegicus

33% id,
88% cov

PTPS_HUMAN / Q03393: 6-pyruvoyl tetrahydrobiopterin synthase; PTP synthase; PTPS; EC 4.2.3.12 from Homo sapiens
Q03393: 6-pyruvoyltetrahydropterin synthase (EC 4.2.3.12) from Homo sapiens

28% id,
92% cov

Pf1N1B4_4910: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
is similar to:
PaperBLAST

AT2L2_HUMAN / Q8IUZ5: 5-phosphohydroxy-L-lysine phospho-lyase; Alanine--glyoxylate aminotransferase 2-like 2; EC 4.2.3.134 from Homo sapiens
Q8IUZ5: 5-phosphonooxy-L-lysine phospho-lyase (EC 4.2.3.134) from Homo sapiens

32% id,
90% cov

Pf1N1B4_205: Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76)
is similar to:
PaperBLAST

AT2L2_HUMAN / Q8IUZ5: 5-phosphohydroxy-L-lysine phospho-lyase; Alanine--glyoxylate aminotransferase 2-like 2; EC 4.2.3.134 from Homo sapiens
Q8IUZ5: 5-phosphonooxy-L-lysine phospho-lyase (EC 4.2.3.134) from Homo sapiens

29% id,
94% cov

Pf1N1B4_4257: L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19)
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

28% id,
93% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

28% id,
82% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

29% id,
76% cov

More...

Pf1N1B4_4758: Threonine dehydratase biosynthetic (EC 4.3.1.19)
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

29% id,
84% cov

Pf1N1B4_1733: 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
is similar to:
PaperBLAST

AT2L2_HUMAN / Q8IUZ5: 5-phosphohydroxy-L-lysine phospho-lyase; Alanine--glyoxylate aminotransferase 2-like 2; EC 4.2.3.134 from Homo sapiens
Q8IUZ5: 5-phosphonooxy-L-lysine phospho-lyase (EC 4.2.3.134) from Homo sapiens

28% id,
86% cov

Pf1N1B4_3440: Succinylornithine transaminase (EC 2.6.1.81)
is similar to:
PaperBLAST

AT2L2_HUMAN / Q8IUZ5: 5-phosphohydroxy-L-lysine phospho-lyase; Alanine--glyoxylate aminotransferase 2-like 2; EC 4.2.3.134 from Homo sapiens
Q8IUZ5: 5-phosphonooxy-L-lysine phospho-lyase (EC 4.2.3.134) from Homo sapiens

27% id,
88% cov

Pf1N1B4_2257: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
is similar to:
PaperBLAST

AT2L2_HUMAN / Q8IUZ5: 5-phosphohydroxy-L-lysine phospho-lyase; Alanine--glyoxylate aminotransferase 2-like 2; EC 4.2.3.134 from Homo sapiens
Q8IUZ5: 5-phosphonooxy-L-lysine phospho-lyase (EC 4.2.3.134) from Homo sapiens

28% id,
74% cov

Pf1N1B4_3506: Cysteine synthase B (EC 2.5.1.47)
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

33% id,
33% cov

Pf1N1B4_2796: Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29)
is similar to:
PaperBLAST

OBLA_EMEVA / A0A1V1FVQ6: Ophiobolin F synthase oblA; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Emericella variicolor

23% id,
40% cov

OBLA_COCH5 / M2V8C1: Ophiobolin F synthase oblA; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Cochliobolus heterostrophus

24% id,
37% cov

OBLA_ASPCI / A0A0U5G0B1: Ophiobolin F synthase; OS; Aspergilol biosynthesis cluster protein AuAS; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Aspergillus calidoustus

23% id,
39% cov

Pf1N1B4_2716: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
is similar to:
PaperBLAST

AT2L2_HUMAN / Q8IUZ5: 5-phosphohydroxy-L-lysine phospho-lyase; Alanine--glyoxylate aminotransferase 2-like 2; EC 4.2.3.134 from Homo sapiens
Q8IUZ5: 5-phosphonooxy-L-lysine phospho-lyase (EC 4.2.3.134) from Homo sapiens

30% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 5 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1773113-1774360 (frame -2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

EVS_ACTMD / C6WFL3: 2-epi-valiolone synthase; EVS; Sedoheptulose 7-phosphate cyclase; EC 4.2.3.155 from Actinosynnema mirum
Amir_2000 / C6WFL3: 2-epi-valiolone synthase (EC 4.2.3.155) from Actinosynnema mirum
C6WFL3: 2-epi-valiolone synthase (EC 4.2.3.155) from Actinosynnema mirum
Also see hits to annotated proteins above

36% id,
96% cov

eevs / E7EXW6: 2-epi-5-epi-valiolone synthase (EC 4.2.3.152) from Danio rerio
Also see hits to annotated proteins above

28% id,
87% cov

114443-114904 (frame +2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

PTPS_MOUSE / Q9R1Z7: 6-pyruvoyl tetrahydrobiopterin synthase; PTP synthase; PTPS; EC 4.2.3.12 from Mus musculus
Also see hits to annotated proteins above

32% id,
97% cov

456295-456693 (frame -3) on unitig_3|quiver|pilon
is similar to:
PaperBLAST

PTPS_DROME / P48611: 6-pyruvoyl tetrahydrobiopterin synthase; PTP synthase; PTPS; Protein purple; Sepiapterin synthase A; EC 4.2.3.12 from Drosophila melanogaster
pr / P48611: 6-pyruvoyl-tetrahydropterin synthase subunit (EC 4.2.3.12) from Drosophila melanogaster

37% id,
76% cov

4719304-4720299 (frame +1) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Also see hits to annotated proteins above

28% id,
97% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus
Also see hits to annotated proteins above

29% id,
82% cov

3911613-3912626 (frame +3) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

31% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory