Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 22 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_3014: Threonine synthase (EC 4.2.3.1)
is similar to:
PaperBLAST

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

58% id,
100% cov

Q2SWH9: threonine synthase (EC 4.2.3.1) from Burkholderia thailandensis

44% id,
99% cov

THRC_CORGL / P23669: Threonine synthase; TS; EC 4.2.3.1 from Corynebacterium glutamicum

44% id,
98% cov

More...

Pf1N1B4_4257: L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19)
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

28% id,
93% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

28% id,
82% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

29% id,
76% cov

More...

Pf1N1B4_4758: Threonine dehydratase biosynthetic (EC 4.3.1.19)
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

29% id,
84% cov

Pf1N1B4_3506: Cysteine synthase B (EC 2.5.1.47)
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

33% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4719304-4720299 (frame +1) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Also see hits to annotated proteins above

28% id,
97% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus
Also see hits to annotated proteins above

29% id,
82% cov

3911613-3912626 (frame +3) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

31% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory