Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 33 curated entries in PaperBLAST's database that match '4.3.1.19' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_2280: Threonine dehydratase biosynthetic (EC 4.3.1.19) is similar to:	PaperBLAST
ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli	53% id, 97% cov
THDH_YEAST / P00927: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Saccharomyces cerevisiae	52% id, 89% cov
V6QU65: threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum	50% id, 87% cov
TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum	53% id, 82% cov
TD_NICAT / Q9AXU4: Threonine dehydratase; Threonine deaminase; EC 4.3.1.19 from Nicotiana attenuata Q9AXU4: threonine ammonia-lyase (EC 4.3.1.19) from Nicotiana attenuata	51% id, 83% cov
THDH_SCHPO / O94634: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Schizosaccharomyces pombe	49% id, 84% cov
TD_SOLTU / P31212: Threonine dehydratase biosynthetic, chloroplastic; Threonine deaminase; EC 4.3.1.19 from Solanum tuberosum	41% id, 100% cov
TD2_SOLLC / P25306: Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum	45% id, 84% cov
CA265_RS15860: threonine deaminase (EC 4.3.1.19) from Pedobacter sp.	39% id, 95% cov
TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium	39% id, 94% cov
TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli tdcB / RF\|NP_417587: threonine ammonia-lyase; EC 4.3.1.19 from Escherichia coli tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli	39% id, 94% cov
A0QX60: threonine ammonia-lyase (EC 4.3.1.19) from Mycolicibacterium smegmatis	39% id, 90% cov
Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum	39% id, 89% cov
TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima	40% id, 86% cov
CCNA_03750: threonine deaminase (EC 4.3.1.19) from Caulobacter crescentus	36% id, 94% cov
TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens	37% id, 90% cov
Ga0059261_3694: threonine deaminase (EC 4.3.1.19) from Sphingomonas koreensis	35% id, 92% cov
SDHL_HUMAN / P20132: L-serine dehydratase/L-threonine deaminase; SDH; Hepatic serine dehydratase; hSDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens SDS / P20132: L-serine dehydratase (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens	31% id, 95% cov
SDSL_HUMAN / Q96GA7: Serine dehydratase-like; Cancerous serine dehydratase; cSDH; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; SDHL; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens	30% id, 95% cov
SDSL_RAT / A0A6N3IN21: Serine dehydratase-like; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Rattus norvegicus	30% id, 93% cov
SDSL_MOUSE / Q8R238: Serine dehydratase-like; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus	29% id, 94% cov
SDHL_RAT / P09367: L-serine dehydratase/L-threonine deaminase; SDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Rattus norvegicus	30% id, 71% cov
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Pf1N1B4_4257: L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) is similar to:	PaperBLAST
SDSL_RAT / A0A6N3IN21: Serine dehydratase-like; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Rattus norvegicus	46% id, 92% cov
SDSL_HUMAN / Q96GA7: Serine dehydratase-like; Cancerous serine dehydratase; cSDH; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; SDHL; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens	46% id, 92% cov
SDSL_MOUSE / Q8R238: Serine dehydratase-like; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus	46% id, 92% cov
SDHL_HUMAN / P20132: L-serine dehydratase/L-threonine deaminase; SDH; Hepatic serine dehydratase; hSDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens SDS / P20132: L-serine dehydratase (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens	42% id, 94% cov
STDH_YEAST / P25379: Catabolic L-serine/threonine dehydratase; EC 4.3.1.17; EC 4.3.1.19 from Saccharomyces cerevisiae	38% id, 88% cov
SDHL_RAT / P09367: L-serine dehydratase/L-threonine deaminase; SDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Rattus norvegicus	42% id, 71% cov
TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli tdcB / RF\|NP_417587: threonine ammonia-lyase; EC 4.3.1.19 from Escherichia coli tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli	26% id, 84% cov
TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium	26% id, 84% cov
CCNA_03750: threonine deaminase (EC 4.3.1.19) from Caulobacter crescentus	30% id, 73% cov
TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima	30% id, 73% cov
TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens	32% id, 67% cov
ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli	33% id, 51% cov
TD2_SOLLC / P25306: Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum	29% id, 52% cov
V6QU65: threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum	27% id, 54% cov
TD_NICAT / Q9AXU4: Threonine dehydratase; Threonine deaminase; EC 4.3.1.19 from Nicotiana attenuata Q9AXU4: threonine ammonia-lyase (EC 4.3.1.19) from Nicotiana attenuata	29% id, 45% cov
THDH_SCHPO / O94634: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Schizosaccharomyces pombe	29% id, 44% cov
SDHL_RAT / P09367: L-serine dehydratase/L-threonine deaminase; SDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Rattus norvegicus	48% id, 16% cov
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Pf1N1B4_4758: Threonine dehydratase biosynthetic (EC 4.3.1.19) is similar to:	PaperBLAST
TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium	39% id, 96% cov
TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli tdcB / RF\|NP_417587: threonine ammonia-lyase; EC 4.3.1.19 from Escherichia coli tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli	40% id, 94% cov
ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli	55% id, 62% cov
TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens	43% id, 75% cov
TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima	42% id, 76% cov
SDSL_HUMAN / Q96GA7: Serine dehydratase-like; Cancerous serine dehydratase; cSDH; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; SDHL; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens	32% id, 97% cov
CCNA_03750: threonine deaminase (EC 4.3.1.19) from Caulobacter crescentus	42% id, 74% cov
A0QX60: threonine ammonia-lyase (EC 4.3.1.19) from Mycolicibacterium smegmatis	38% id, 79% cov
SDHL_HUMAN / P20132: L-serine dehydratase/L-threonine deaminase; SDH; Hepatic serine dehydratase; hSDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens SDS / P20132: L-serine dehydratase (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens	31% id, 98% cov
Ga0059261_3694: threonine deaminase (EC 4.3.1.19) from Sphingomonas koreensis	40% id, 75% cov
SDSL_RAT / A0A6N3IN21: Serine dehydratase-like; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Rattus norvegicus	31% id, 95% cov
SDSL_MOUSE / Q8R238: Serine dehydratase-like; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus	31% id, 96% cov
THDH_YEAST / P00927: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Saccharomyces cerevisiae	52% id, 57% cov
TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum	55% id, 52% cov
Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum	39% id, 73% cov
CA265_RS15860: threonine deaminase (EC 4.3.1.19) from Pedobacter sp.	39% id, 73% cov
V6QU65: threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum	50% id, 56% cov
TD_NICAT / Q9AXU4: Threonine dehydratase; Threonine deaminase; EC 4.3.1.19 from Nicotiana attenuata Q9AXU4: threonine ammonia-lyase (EC 4.3.1.19) from Nicotiana attenuata	51% id, 55% cov
TD2_SOLLC / P25306: Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum	49% id, 56% cov
THDH_SCHPO / O94634: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Schizosaccharomyces pombe	50% id, 54% cov
TD_SOLTU / P31212: Threonine dehydratase biosynthetic, chloroplastic; Threonine deaminase; EC 4.3.1.19 from Solanum tuberosum	49% id, 50% cov
SDHL_RAT / P09367: L-serine dehydratase/L-threonine deaminase; SDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Rattus norvegicus	31% id, 72% cov
SDHL_RAT / P09367: L-serine dehydratase/L-threonine deaminase; SDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Rattus norvegicus	49% id, 11% cov
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Pf1N1B4_1831: Tryptophan synthase beta chain (EC 4.2.1.20) is similar to:	PaperBLAST
Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum	25% id, 72% cov
TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum	27% id, 36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5255983-5257182 (frame +1) on unitig_2\|quiver.unitig_0\|quiver.unitig_1\|quiver\|pilon is similar to:	PaperBLAST
TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium Also see hits to annotated proteins above	39% id, 98% cov
Ga0059261_3694: threonine deaminase (EC 4.3.1.19) from Sphingomonas koreensis Also see hits to annotated proteins above	39% id, 80% cov
V6QU65: threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum Also see hits to annotated proteins above	47% id, 62% cov
TD2_SOLLC / P25306: Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum Also see hits to annotated proteins above	46% id, 62% cov
THDH_SCHPO / O94634: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Schizosaccharomyces pombe Also see hits to annotated proteins above	47% id, 59% cov
More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory