Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 34 curated entries in PaperBLAST's database that match '4.3.1.3'.

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3)
is similar to:
PaperBLAST

Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

100% id,
100% cov

AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

92% id,
100% cov

BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans

42% id,
94% cov

More...

Pf1N1B4_1581: Histidine ammonia-lyase (EC 4.3.1.3)
is similar to:
PaperBLAST

PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

97% id,
100% cov

Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

95% id,
100% cov

HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida
hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida

84% id,
100% cov

More...

Pf1N1B4_1509: Putative histidine ammonia-lyase protein
is similar to:
PaperBLAST

BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans

36% id,
95% cov

SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti

34% id,
96% cov

Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis

33% id,
98% cov

More...

Pf1N1B4_3440: Succinylornithine transaminase (EC 2.6.1.81)
is similar to:
PaperBLAST

pbfA / A3UZK3: (R)-1-hydroxy-2-aminoethylphosphonate ammonia-lyase (EC 4.3.1.33) from Vibrio splendidus

31% id,
85% cov

Pf1N1B4_4910: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
is similar to:
PaperBLAST

pbfA / A3UZK3: (R)-1-hydroxy-2-aminoethylphosphonate ammonia-lyase (EC 4.3.1.33) from Vibrio splendidus

29% id,
91% cov

Pf1N1B4_205: Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76)
is similar to:
PaperBLAST

pbfA / A3UZK3: (R)-1-hydroxy-2-aminoethylphosphonate ammonia-lyase (EC 4.3.1.33) from Vibrio splendidus

29% id,
85% cov

Pf1N1B4_1239: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
is similar to:
PaperBLAST

pbfA / A3UZK3: (R)-1-hydroxy-2-aminoethylphosphonate ammonia-lyase (EC 4.3.1.33) from Vibrio splendidus

28% id,
86% cov

Pf1N1B4_1733: 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
is similar to:
PaperBLAST

pbfA / A3UZK3: (R)-1-hydroxy-2-aminoethylphosphonate ammonia-lyase (EC 4.3.1.33) from Vibrio splendidus

28% id,
85% cov

Pf1N1B4_2377: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
is similar to:
PaperBLAST

pbfA / A3UZK3: (R)-1-hydroxy-2-aminoethylphosphonate ammonia-lyase (EC 4.3.1.33) from Vibrio splendidus

25% id,
90% cov

Pf1N1B4_1663: 4-aminobutyrate aminotransferase (EC 2.6.1.19)
is similar to:
PaperBLAST

pbfA / A3UZK3: (R)-1-hydroxy-2-aminoethylphosphonate ammonia-lyase (EC 4.3.1.33) from Vibrio splendidus

25% id,
84% cov

Pf1N1B4_2257: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
is similar to:
PaperBLAST

pbfA / A3UZK3: (R)-1-hydroxy-2-aminoethylphosphonate ammonia-lyase (EC 4.3.1.33) from Vibrio splendidus

26% id,
75% cov

Pf1N1B4_2980: Acetylornithine aminotransferase (EC 2.6.1.11)
is similar to:
PaperBLAST

pbfA / A3UZK3: (R)-1-hydroxy-2-aminoethylphosphonate ammonia-lyase (EC 4.3.1.33) from Vibrio splendidus

31% id,
57% cov

Pf1N1B4_4553: FIG00959354: hypothetical protein
is similar to:
PaperBLAST

pbfA / A3UZK3: (R)-1-hydroxy-2-aminoethylphosphonate ammonia-lyase (EC 4.3.1.33) from Vibrio splendidus

27% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory