Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 8 curated entries in PaperBLAST's database that match '4.3.1.9' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1046: Thioredoxin reductase (EC 1.8.1.9)
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

97% id,
99% cov

Pf1N1B4_5639: D-serine deaminase (EC 4.3.1.18)
is similar to:
PaperBLAST

PfGW456L13_2867: D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens

94% id,
100% cov

AO353_21740: D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens

89% id,
100% cov

Pf6N2E2_2047: D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens

87% id,
100% cov

More...

Pf1N1B4_4059: Thioredoxin reductase (EC 1.8.1.9)
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

73% id,
98% cov

Pf1N1B4_5010: Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

35% id,
95% cov

Pf1N1B4_4210: Type III PLP / low-specificity D-threonine aldolase
is similar to:
PaperBLAST

PS417_12125 / A0A1N7U313: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas simiae
PS417_12125: D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas simiae

24% id,
84% cov

PfGW456L13_2867: D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens

24% id,
83% cov

AO353_21740: D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens

24% id,
83% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory