Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 52 curated entries in PaperBLAST's database that match '4.3.2.1'.

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1623: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus
Q7SIB9: imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) from Thermus thermophilus

59% id,
99% cov

Q5NMD6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Zymomonas mobilis

58% id,
98% cov

A4WHB6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum arsenaticum

57% id,
100% cov

More...

Pf1N1B4_4806: Argininosuccinate lyase (EC 4.3.2.1)
is similar to:
PaperBLAST

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

52% id,
98% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

42% id,
99% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

40% id,
100% cov

More...

Pf1N1B4_1626: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
is similar to:
PaperBLAST

HSERO_RS20325: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Herbaspirillum seropedicae

51% id,
99% cov

DVU0285: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

45% id,
94% cov

DvMF_2305: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

44% id,
96% cov

More...

Pf1N1B4_2183: Argininosuccinate lyase (EC 4.3.2.1)
is similar to:
PaperBLAST

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

50% id,
99% cov

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

50% id,
99% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

49% id,
100% cov

More...

Pf1N1B4_1624: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
is similar to:
PaperBLAST

A4WHB6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum arsenaticum

31% id,
94% cov

Q8ZY16: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum aerophilum

30% id,
94% cov

Q5NMD6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Zymomonas mobilis

29% id,
92% cov

More...

Pf1N1B4_3237: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)
is similar to:
PaperBLAST

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

26% id,
61% cov

Pf1N1B4_3711: Cobyric acid synthase (EC 6.3.5.10)
is similar to:
PaperBLAST

HIS5_THET8 / Q7SIC0: Imidazole glycerol phosphate synthase subunit HisH; IGP synthase glutaminase subunit; IGP synthase subunit HisH; ImGP synthase subunit HisH; IGPS subunit HisH; EC 4.3.2.10; EC 3.5.1.2 from Thermus thermophilus
Q7SIC0: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Thermus thermophilus

37% id,
37% cov

Pf1N1B4_2025: Aspartate ammonia-lyase (EC 4.3.1.1)
is similar to:
PaperBLAST

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

25% id,
50% cov

Pf1N1B4_5028: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)
is similar to:
PaperBLAST

A4WHB6: imidazole glycerol-phosphate synthase (subunit 2/2) (EC 4.3.2.10) from Pyrobaculum arsenaticum

37% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory