Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 60 curated entries in PaperBLAST's database that match '5.1.3.2' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_5092: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:		 PaperBLAST

GALE_NEIMC / P56986: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Neisseria meningitidis

 55% id,
99% cov

GALE_HAEIN / P24325: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Haemophilus influenzae

 54% id,
99% cov

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

 55% id,
99% cov

More...

Pf1N1B4_2638: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:		 PaperBLAST

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 41% id,
97% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 41% id,
94% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 39% id,
97% cov

More...

Pf1N1B4_3585: UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-)
is similar to:		 PaperBLAST

CAPD_RICPR / Q9ZDJ5: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Rickettsia prowazekii

 40% id,
96% cov

V5RBP5: UDP-glucose 4-epimerase (EC 5.1.3.2) from Acinetobacter baumannii

 42% id,
90% cov

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

 28% id,
72% cov

More...

Pf1N1B4_343: dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)
is similar to:		 PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 33% id,
100% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

 32% id,
98% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 31% id,
99% cov

More...

Pf1N1B4_1223: dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)
is similar to:		 PaperBLAST

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

 33% id,
98% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 32% id,
100% cov

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 32% id,
99% cov

More...

Pf1N1B4_5939: dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)
is similar to:		 PaperBLAST

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 32% id,
100% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 32% id,
100% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 31% id,
100% cov

More...

Pf1N1B4_5885: dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)
is similar to:		 PaperBLAST

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

 32% id,
98% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 31% id,
99% cov

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 30% id,
99% cov

More...

Pf1N1B4_322: nucleotide sugar epimerase/dehydratase WbpM
is similar to:		 PaperBLAST

V5RBP5: UDP-glucose 4-epimerase (EC 5.1.3.2) from Acinetobacter baumannii

 36% id,
77% cov

CAPD_RICPR / Q9ZDJ5: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Rickettsia prowazekii

 34% id,
79% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 20% id,
92% cov

Pf1N1B4_3578: Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45)
is similar to:		 PaperBLAST

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

 25% id,
97% cov

Echvi_1472: UDP-glucose 4-epimerase (EC 5.1.3.2) from Echinicola vietnamensis

 24% id,
99% cov

GALE_LACHE / Q7WTB1: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Lactobacillus helveticus

 30% id,
62% cov

More...

Pf1N1B4_1966: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:		 PaperBLAST

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

 31% id,
79% cov

UGE1_PEA / B0M3E8: Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1; UDP-D-xylose 4-epimerase; UDP-L-arabinose 4-epimerase; UDP-galactose 4-epimerase 1; UDP-glucose 4-epimerase 1; PsUGE1; EC 5.1.3.2; EC 5.1.3.5 from Pisum sativum
B0M3E8: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Pisum sativum

 27% id,
71% cov

UGE2_ARATH / Q9T0A7: UDP-glucose 4-epimerase 2; AtUGE2; UDP-galactose 4-epimerase 2; EC 5.1.3.2 from Arabidopsis thaliana
Q9T0A7: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Arabidopsis thaliana

 27% id,
73% cov

More...

Pf1N1B4_339: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:		 PaperBLAST

GALE_CAEEL / Q564Q1: UDP-glucose 4-epimerase; Galactowaldenase; UDP-N-acetylgalactosamine 4-epimerase; UDP-GalNAc 4-epimerase; UDP-N-acetylglucosamine 4-epimerase; UDP-GlcNAc 4-epimerase; UDP-galactose 4-epimerase; EC 5.1.3.2; EC 5.1.3.7 from Caenorhabditis elegans

 26% id,
94% cov

Pf1N1B4_3581: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:		 PaperBLAST

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 24% id,
86% cov

Pf1N1B4_4511: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:		 PaperBLAST

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

 27% id,
59% cov

GALE_HUMAN / Q14376: UDP-glucose 4-epimerase; Galactowaldenase; UDP-N-acetylgalactosamine 4-epimerase; UDP-GalNAc 4-epimerase; UDP-N-acetylglucosamine 4-epimerase; UDP-GlcNAc 4-epimerase; UDP-galactose 4-epimerase; EC 5.1.3.2; EC 5.1.3.7 from Homo sapiens
GALE / Q14376: UDP-galactose 4-epimerase (EC 5.1.3.2; EC 5.1.3.7) from Homo sapiens
Q14376: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Homo sapiens

 27% id,
47% cov

Pf1N1B4_84: Aldose 1-epimerase (EC 5.1.3.3)
is similar to:		 PaperBLAST

P04397: UDP-glucose 4-epimerase (EC 5.1.3.2) from Saccharomyces cerevisiae

 30% id,
45% cov

Q9HDU3: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schizosaccharomyces pombe

 32% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory