Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 11 curated entries in PaperBLAST's database that match '5.1.3.29'.

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_6030: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
is similar to:
PaperBLAST

FUCM_ECOLI / P0AEN8: L-fucose mutarotase; D-ribose pyranase; Fucose 1-epimerase; Type-2 mutarotase; EC 5.1.3.29; EC 5.4.99.62 from Escherichia coli
FucU / b2804: L-fucose mutarotase (EC 5.1.3.29; EC 5.4.99.62) from Escherichia coli
fucU / P0AEN8: L-fucose mutarotase (EC 5.1.3.29; EC 5.4.99.62) from Escherichia coli
P0AEN8: L-fucose mutarotase (EC 5.1.3.29); D-ribose pyranase (EC 5.4.99.62) from Escherichia coli

29% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory