Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 9 curated entries in PaperBLAST's database that match '5.4.2.6' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_3808: hydrolase, haloacid dehalogenase-like family
is similar to:
PaperBLAST

PGMB_LACLA / P71447: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Lactococcus lactis
pgmB / P71447: β-phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis
P71447: beta-Phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis

33% id,
85% cov

PGMB_BACSU / O06995: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Bacillus subtilis

31% id,
83% cov

Pf1N1B4_357: Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase
is similar to:
PaperBLAST

PGMB_ECOLI / P77366: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Escherichia coli
ycjU / P77366: β-phosphoglucomutase (EC 5.4.2.6) from Escherichia coli
P77366: beta-Phosphoglucomutase (EC 5.4.2.6) from Escherichia coli

24% id,
88% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory