Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)
Found 153 curated entries in PaperBLAST's database that match '5.5.1.1'.
These curated entries have 114 distinct sequences.
Running ublast with E ≤ 0.01
Found 10 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query
| Pf1N1B4_5805: Muconate cycloisomerase (EC 5.5.1.1) is similar to: | PaperBLAST |
catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei | 94% id, 100% cov |
Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens | 90% id, 100% cov |
PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae | 90% id, 100% cov |
| Pf1N1B4_398: Galactonate dehydratase (EC 4.2.1.6) is similar to: | PaperBLAST |
tcbD / P27099: chloromuconate cycloisomerase subunit (EC 5.5.1.11; EC 5.5.1.7) from Pseudomonas sp. | 26% id, 100% cov |
tfdDI / P05404: chloromuconate cycloisomerase subunit (EC 5.5.1.7; EC 5.5.1.11) from Cupriavidus pinatubonensis | 29% id, 90% cov |
Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens | 27% id, 91% cov |
| Pf1N1B4_5057: mandelate racemase family protein Pfl_3283 is similar to: | PaperBLAST |
tcbD / P27099: chloromuconate cycloisomerase subunit (EC 5.5.1.11; EC 5.5.1.7) from Pseudomonas sp. | 25% id, 98% cov |
clcB / Q706U0: chloromuconate cycloisomerase subunit (EC 5.5.1.7; EC 5.5.1.11) from Pseudomonas putida | 25% id, 90% cov |
PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae | 25% id, 89% cov |
| Pf1N1B4_3383: Mandelate racemase (EC 5.1.2.2) is similar to: | PaperBLAST |
PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae | 25% id, 93% cov |
| Pf1N1B4_5693: Gluconate dehydratase (EC 4.2.1.39) is similar to: | PaperBLAST |
CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida | 23% id, 92% cov |
Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens | 24% id, 87% cov |
PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae | 23% id, 88% cov |
| Pf1N1B4_71: Glucarate dehydratase (EC 4.2.1.40) is similar to: | PaperBLAST |
clcB / Q706U0: chloromuconate cycloisomerase subunit (EC 5.5.1.7; EC 5.5.1.11) from Pseudomonas putida | 24% id, 59% cov |
| Pf1N1B4_2796: Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) is similar to: | PaperBLAST |
PVCPS_TALVE / A0A348FUE1: Copalyl diphosphate synthase; CPS; Bifunctional diterpene synthase PvCPS; EC 5.5.1.12; EC 2.5.1.29 from Talaromyces verruculosus | 28% id, 27% cov |
| Pf1N1B4_1477: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) is similar to: | PaperBLAST |
A0A1X9RR88: lycopene beta-cyclase (EC 5.5.1.19) from Bangia fuscopurpurea | 37% id, 16% cov |
A0A1X9RR88: lycopene beta-cyclase (EC 5.5.1.19) from Bangia fuscopurpurea | 34% id, 16% cov |
| Pf1N1B4_2737: NAD(FAD)-utilizing dehydrogenases is similar to: | PaperBLAST |
LYCb / Q6YUU2: lycopene β-cyclase (EC 5.5.1.19) from Oryza sativa | 36% id, 12% cov |
LCYB_ONCHC / D9IL23: Lycopene beta cyclase, chloroplastic; OgLCY-B; EC 5.5.1.19 from Oncidium hybrid | 37% id, 10% cov |
A0A1L7NW83: lycopene beta-cyclase (EC 5.5.1.19) from Ipomoea batatas | 49% id, 7% cov |
| Pf1N1B4_91: monooxygenase, FAD-binding is similar to: | PaperBLAST |
NSY_SOLLC / K4C9E2: Neoxanthin synthase, chloroplastic; Lycopene beta-cyclase; EC 5.3.99.9; EC 5.5.1.19 from Solanum lycopersicum | 58% id, 6% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 9 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 3075739-3077064 (frame -3) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon is similar to: | PaperBLAST |
LYCb / Q6YUU2: lycopene β-cyclase (EC 5.5.1.19) from Oryza sativa | 28% id, 17% cov |
| 149728-151425 (frame -3) on unitig_3|quiver|pilon is similar to: | PaperBLAST |
Q42435: capsanthin/capsorubin synthase (EC 5.3.99.8); lycopene beta-cyclase (EC 5.5.1.19) from Capsicum annuum | 27% id, 18% cov |
Lawrence Berkeley National Laboratory