Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)
Found 34 curated entries in PaperBLAST's database that match '5.5.1.2'.
These curated entries have 20 distinct sequences.
Running ublast with E ≤ 0.01
Found 8 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query
| Pf1N1B4_3237: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) is similar to: | PaperBLAST |
RR42_RS32055: 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2) from Cupriavidus basilensis | 54% id, 97% cov |
pcaB2 / Q2HNY9: 3-carboxymuconate lactonizing enzyme type 2 (EC 5.5.1.2) from Hydrogenophaga intermedia | 41% id, 90% cov |
Q2HNZ1: 3-Carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) from Agrobacterium tumefaciens | 38% id, 95% cov |
| Pf1N1B4_398: Galactonate dehydratase (EC 4.2.1.6) is similar to: | PaperBLAST |
GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum | 36% id, 90% cov |
ACI_VIBSJ / H2IFX0: 3,6-anhydro-alpha-L-galactonate cycloisomerase; AHGA cycloisomerase; EC 5.5.1.25 from Vibrio sp. | 28% id, 89% cov |
| Pf1N1B4_5693: Gluconate dehydratase (EC 4.2.1.39) is similar to: | PaperBLAST |
GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum | 31% id, 96% cov |
ACI_STRCO / Q9RKF7: 3,6-anhydro-alpha-L-galactonate cycloisomerase; AHGA cycloisomerase; EC 5.5.1.25 from Streptomyces coelicolor | 32% id, 89% cov |
ACI_VIBSJ / H2IFX0: 3,6-anhydro-alpha-L-galactonate cycloisomerase; AHGA cycloisomerase; EC 5.5.1.25 from Vibrio sp. | 30% id, 87% cov |
| Pf1N1B4_3383: Mandelate racemase (EC 5.1.2.2) is similar to: | PaperBLAST |
GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum | 30% id, 99% cov |
ACI_STRCO / Q9RKF7: 3,6-anhydro-alpha-L-galactonate cycloisomerase; AHGA cycloisomerase; EC 5.5.1.25 from Streptomyces coelicolor | 31% id, 92% cov |
ACI_VIBSJ / H2IFX0: 3,6-anhydro-alpha-L-galactonate cycloisomerase; AHGA cycloisomerase; EC 5.5.1.25 from Vibrio sp. | 26% id, 99% cov |
| Pf1N1B4_5805: Muconate cycloisomerase (EC 5.5.1.1) is similar to: | PaperBLAST |
ACI_STRCO / Q9RKF7: 3,6-anhydro-alpha-L-galactonate cycloisomerase; AHGA cycloisomerase; EC 5.5.1.25 from Streptomyces coelicolor | 27% id, 98% cov |
GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum | 25% id, 98% cov |
| Pf1N1B4_71: Glucarate dehydratase (EC 4.2.1.40) is similar to: | PaperBLAST |
GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum | 26% id, 92% cov |
ACI_STRCO / Q9RKF7: 3,6-anhydro-alpha-L-galactonate cycloisomerase; AHGA cycloisomerase; EC 5.5.1.25 from Streptomyces coelicolor | 25% id, 55% cov |
| Pf1N1B4_2183: Argininosuccinate lyase (EC 4.3.2.1) is similar to: | PaperBLAST |
Q2HNZ1: 3-Carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) from Agrobacterium tumefaciens | 24% id, 75% cov |
| Pf1N1B4_4874: hypothetical protein is similar to: | PaperBLAST |
DNRD_STRGJ / O52646: Aklanonic acid methyl ester cyclase AcmA; AAME cyclase; Methyl aklanonate cyclase; EC 5.5.1.23 from Streptomyces galilaeus | 35% id, 48% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 5393657-5394121 (frame +2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon is similar to: | PaperBLAST |
DNRD_STRGJ / O52646: Aklanonic acid methyl ester cyclase AcmA; AAME cyclase; Methyl aklanonate cyclase; EC 5.5.1.23 from Streptomyces galilaeus | 29% id, 88% cov |
Lawrence Berkeley National Laboratory