Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 10 curated entries in PaperBLAST's database that match '6.2.1.16'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_5634: Acetoacetyl-CoA synthetase (EC 6.2.1.16)
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

55% id,
99% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

44% id,
98% cov

Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

44% id,
98% cov

More...

Pf1N1B4_3988: Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

55% id,
98% cov

Pf1N1B4_5982: Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

27% id,
97% cov

Pf1N1B4_3430: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

28% id,
90% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

26% id,
93% cov

Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

25% id,
90% cov

More...

Pf1N1B4_575: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

31% id,
79% cov

Pf1N1B4_2849: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
is similar to:
PaperBLAST

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

26% id,
92% cov

AACS_HUMAN / Q86V21: Acetoacetyl-CoA synthetase; Acyl-CoA synthetase family member 1; Protein sur-5 homolog; EC 6.2.1.16 from Homo sapiens
Q86V21: acetoacetate-CoA ligase (EC 6.2.1.16) from Homo sapiens

25% id,
92% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

25% id,
91% cov

More...

Pf1N1B4_5705: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

26% id,
90% cov

Pf1N1B4_4784: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

26% id,
90% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

26% id,
79% cov

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

25% id,
80% cov

More...

Pf1N1B4_572: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

33% id,
59% cov

Pf1N1B4_214: Pyoverdine chromophore precursor synthetase PvdL
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

28% id,
65% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

27% id,
24% cov

Pf1N1B4_146: Non-ribosomal peptide synthetase modules, pyoverdine
is similar to:
PaperBLAST

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

23% id,
78% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

25% id,
26% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

25% id,
21% cov

Pf1N1B4_215: Pyoverdine chromophore precursor synthetase PvdL
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

27% id,
64% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

26% id,
29% cov

Pf1N1B4_3784: Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

24% id,
52% cov

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

27% id,
30% cov

Pf1N1B4_574: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

39% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory