Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 2 curated entries in PaperBLAST's database that match '5-deoxy-glucuronate isomerase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_4276: 5-deoxy-glucuronate isomerase (EC 5.3.1.-)
is similar to:

IOLB_BACSU / P42413: 5-deoxy-glucuronate isomerase; 5DG isomerase; EC from Bacillus subtilis
P42413: 5-deoxy-glucuronate isomerase (EC from Bacillus subtilis

50% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory