Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 22 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_620: Glycine cleavage system H protein is similar to:	PaperBLAST
PfGW456L13_1869: glycine cleavage system H protein (EC 1.4.1.27) from Pseudomonas fluorescens	97% id, 100% cov
GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli Gcv / b2904: glycine cleavage system H protein from Escherichia coli gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli	53% id, 95% cov
GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus	53% id, 94% cov
GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis	42% id, 97% cov
GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus	41% id, 95% cov
gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.	40% id, 88% cov
GCSH_HUMAN / P23434: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Homo sapiens GCSH / P23434: glycine cleavage system H protein, mitochondrial (EC 1.4.1.27) from Homo sapiens	46% id, 73% cov
GCSH_BOVIN / P20821: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Bos taurus	46% id, 73% cov
GCSH_CHICK / P11183: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Gallus gallus	44% id, 75% cov
GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii	45% id, 72% cov
GCSH_ORYSJ / A3C6G9: Glycine cleavage system H protein, mitochondrial from Oryza sativa	42% id, 73% cov
GCSH_SCHPO / Q9HDV9: Putative glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Schizosaccharomyces pombe	42% id, 72% cov
GCSH1_ARATH / P25855: Glycine cleavage system H protein 1, mitochondrial from Arabidopsis thaliana GDH1 / P25855: glycine cleavage system H protein 1 (EC 1.4.1.27) from Arabidopsis thaliana	38% id, 77% cov
GCSH_FLATR / P46485: Glycine cleavage system H protein, mitochondrial; Lipoyl-bearing H protein from Flaveria trinervia	38% id, 77% cov
GCSH3_ARATH / Q9LQL0: Glycine cleavage system H protein 3, mitochondrial from Arabidopsis thaliana	38% id, 77% cov
GCSH_YEAST / P39726: Glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Saccharomyces cerevisiae	40% id, 72% cov
More...

Pf1N1B4_2235: Glycine cleavage system H protein is similar to:	PaperBLAST
GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli Gcv / b2904: glycine cleavage system H protein from Escherichia coli gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli	55% id, 99% cov
GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus	54% id, 96% cov
PfGW456L13_1869: glycine cleavage system H protein (EC 1.4.1.27) from Pseudomonas fluorescens	51% id, 94% cov
GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus	47% id, 98% cov
GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis	49% id, 90% cov
gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.	44% id, 95% cov
GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii	56% id, 71% cov
GCSH_ORYSJ / A3C6G9: Glycine cleavage system H protein, mitochondrial from Oryza sativa	56% id, 70% cov
GCSH3_ARATH / Q9LQL0: Glycine cleavage system H protein 3, mitochondrial from Arabidopsis thaliana	50% id, 70% cov
GCSH_FLATR / P46485: Glycine cleavage system H protein, mitochondrial; Lipoyl-bearing H protein from Flaveria trinervia	52% id, 66% cov
GCSH1_ARATH / P25855: Glycine cleavage system H protein 1, mitochondrial from Arabidopsis thaliana GDH1 / P25855: glycine cleavage system H protein 1 (EC 1.4.1.27) from Arabidopsis thaliana	48% id, 70% cov
GCSH_HUMAN / P23434: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Homo sapiens GCSH / P23434: glycine cleavage system H protein, mitochondrial (EC 1.4.1.27) from Homo sapiens	51% id, 66% cov
GCSH_BOVIN / P20821: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Bos taurus	51% id, 66% cov
GCSH_CHICK / P11183: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Gallus gallus	47% id, 70% cov
GCSH_SCHPO / Q9HDV9: Putative glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Schizosaccharomyces pombe	48% id, 66% cov
GCSH_YEAST / P39726: Glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Saccharomyces cerevisiae	42% id, 70% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory