Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 1 curated entries in PaperBLAST's database that match 'N-acetyl-LL-diaminopimelate aminotransferase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_5070: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

37% id,
91% cov

Pf1N1B4_4425: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

36% id,
89% cov

Pf1N1B4_2863: Valine--pyruvate aminotransferase (EC 2.6.1.66)
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

31% id,
94% cov

Pf1N1B4_849: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

31% id,
95% cov

Pf1N1B4_4996: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

32% id,
90% cov

Pf1N1B4_555: Uncharacterized PLP-dependent aminotransferase YfdZ
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

29% id,
88% cov

Pf1N1B4_261: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

27% id,
95% cov

Pf1N1B4_4946: putative aminotransferase
is similar to:
PaperBLAST

DAPX_BACSU / P16524: Probable N-acetyl-LL-diaminopimelate aminotransferase; Putative aminotransferase A; EC 2.6.1.- from Bacillus subtilis

23% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory