Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 22 curated entries in PaperBLAST's database that match 'argininosuccinate lyase' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_2183: Argininosuccinate lyase (EC 4.3.2.1) is similar to:	PaperBLAST
argH / BAC65282.1: argininosuccinate lyase from Burkholderia multivorans	64% id, 99% cov
2e9fB / Q5SLL0: Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine	52% id, 98% cov
ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.	50% id, 99% cov
ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli	50% id, 99% cov
1tj7B / P11447: Structure determination and refinement at 2.44 a resolution of argininosuccinate lyase from e. Coli	49% id, 100% cov
Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans	49% id, 100% cov
argH / CAA88927.2: argininosuccinate lyase from Streptomyces clavuligerus	45% id, 96% cov
Q9P870: argininosuccinate lyase (EC 4.3.2.1) from Agaricus bisporus	44% id, 98% cov
P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis	44% id, 98% cov
ARLY_HUMAN / P04424: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Homo sapiens ASL / P04424: argininosuccinate lyase (EC 4.3.2.1) from Homo sapiens	44% id, 99% cov
6ienB / P9WPY7: Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis	44% id, 98% cov
ARG4: argininosuccinate lyase from Candida albicans	44% id, 98% cov
ARLY_YEAST / P04076: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Saccharomyces cerevisiae	44% id, 98% cov
arg7 / RF\|NP_595129.1: argininosuccinate lyase; EC 4.3.2.1 from Schizosaccharomyces pombe	43% id, 98% cov
ARG7 / CAA09001.1: argininosuccinate lyase from Chlamydomonas reinhardtii	43% id, 98% cov
ARLY_MOUSE / Q91YI0: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Mus musculus	42% id, 99% cov
ARLY2_ANAPL / P24058: Argininosuccinate lyase; ASAL; Arginosuccinase; Delta crystallin II; Delta-2 crystallin; EC 4.3.2.1 from Anas platyrhynchos	43% id, 99% cov
ARLY_COLLI / Q01592: Argininosuccinate lyase; ASAL; Arginosuccinase; Delta crystallin; EC 4.3.2.1 from Columba livia	42% id, 97% cov
ARLY_ANSAN / P33110: Argininosuccinate lyase; ASAL; Arginosuccinase; Delta crystallin; EC 4.3.2.1 from Anser anser	41% id, 97% cov
More...

Pf1N1B4_4806: Argininosuccinate lyase (EC 4.3.2.1) is similar to:	PaperBLAST
argH / CAA88927.2: argininosuccinate lyase from Streptomyces clavuligerus	55% id, 97% cov
6ienB / P9WPY7: Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis	53% id, 98% cov
P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis	52% id, 98% cov
2e9fB / Q5SLL0: Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine	44% id, 99% cov
ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.	42% id, 99% cov
Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans	40% id, 100% cov
Q9P870: argininosuccinate lyase (EC 4.3.2.1) from Agaricus bisporus	41% id, 99% cov
argH / BAC65282.1: argininosuccinate lyase from Burkholderia multivorans	41% id, 97% cov
ARLY_HUMAN / P04424: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Homo sapiens ASL / P04424: argininosuccinate lyase (EC 4.3.2.1) from Homo sapiens	40% id, 100% cov
ARG7 / CAA09001.1: argininosuccinate lyase from Chlamydomonas reinhardtii	40% id, 98% cov
ARLY_MOUSE / Q91YI0: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Mus musculus	39% id, 100% cov
ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli	39% id, 100% cov
arg7 / RF\|NP_595129.1: argininosuccinate lyase; EC 4.3.2.1 from Schizosaccharomyces pombe	38% id, 99% cov
1tj7B / P11447: Structure determination and refinement at 2.44 a resolution of argininosuccinate lyase from e. Coli	40% id, 96% cov
ARLY_COLLI / Q01592: Argininosuccinate lyase; ASAL; Arginosuccinase; Delta crystallin; EC 4.3.2.1 from Columba livia	38% id, 100% cov
ARLY_YEAST / P04076: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Saccharomyces cerevisiae	37% id, 100% cov
ARLY2_ANAPL / P24058: Argininosuccinate lyase; ASAL; Arginosuccinase; Delta crystallin II; Delta-2 crystallin; EC 4.3.2.1 from Anas platyrhynchos	38% id, 98% cov
ARLY_ANSAN / P33110: Argininosuccinate lyase; ASAL; Arginosuccinase; Delta crystallin; EC 4.3.2.1 from Anser anser	37% id, 100% cov
ARG4: argininosuccinate lyase from Candida albicans	37% id, 100% cov
More...

Pf1N1B4_3237: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) is similar to:	PaperBLAST
argH / CAA88927.2: argininosuccinate lyase from Streptomyces clavuligerus	25% id, 71% cov
6ienB / P9WPY7: Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis	26% id, 63% cov
P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis	26% id, 61% cov

Pf1N1B4_1088: Fumarate hydratase class II (EC 4.2.1.2) is similar to:	PaperBLAST
ARG7 / CAA09001.1: argininosuccinate lyase from Chlamydomonas reinhardtii	23% id, 70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory