Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)
Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 15 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query
| Pf1N1B4_5692: Nitrate/nitrite transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 43% id, 96% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 41% id, 94% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 38% id, 92% cov |
| Pf1N1B4_4622: Nitrate/nitrite transporter is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 41% id, 97% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 40% id, 91% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 37% id, 93% cov |
| Pf1N1B4_70: Major facilitator family transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 40% id, 97% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 38% id, 95% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 34% id, 99% cov |
| Pf1N1B4_5058: D-galactarate permease is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 38% id, 98% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 40% id, 92% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 36% id, 100% cov |
| Pf1N1B4_5000: D-glycerate transporter (predicted) is similar to: | PaperBLAST |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 37% id, 96% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 35% id, 96% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 35% id, 96% cov |
| Pf1N1B4_4764: 2-ketogluconate transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 30% id, 89% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 28% id, 93% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 26% id, 91% cov |
| Pf1N1B4_397: Hexuronate transporter is similar to: | PaperBLAST |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 27% id, 96% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 24% id, 94% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 25% id, 91% cov |
| Pf1N1B4_3380: D-glucarate permease is similar to: | PaperBLAST |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 27% id, 94% cov |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 28% id, 87% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 26% id, 91% cov |
| Pf1N1B4_1108: D-galactarate permease is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 26% id, 93% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 25% id, 95% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 24% id, 91% cov |
| Pf1N1B4_2832: benzoate MFS transporter BenK is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 24% id, 96% cov |
| Pf1N1B4_4198: 4-hydroxybenzoate transporter is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 24% id, 91% cov |
| Pf1N1B4_2746: Hexuronate transporter is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 26% id, 83% cov |
| Pf1N1B4_3223: Major facilitator family transporter is similar to: | PaperBLAST |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 24% id, 86% cov |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 23% id, 85% cov |
| Pf1N1B4_3365: Sialic acid transporter (permease) NanT is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 26% id, 28% cov |
| Pf1N1B4_487: Sialic acid transporter (permease) NanT is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 25% id, 29% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 14 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 5602352-5603962 (frame -2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 37% id, 99% cov |
Lawrence Berkeley National Laboratory