Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_5692: Nitrate/nitrite transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

43% id,
96% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

41% id,
94% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

38% id,
92% cov

More...

Pf1N1B4_4622: Nitrate/nitrite transporter
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

41% id,
97% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

40% id,
91% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

37% id,
93% cov

More...

Pf1N1B4_70: Major facilitator family transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

40% id,
97% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

38% id,
95% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

34% id,
99% cov

More...

Pf1N1B4_5058: D-galactarate permease
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

38% id,
98% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

40% id,
92% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

36% id,
100% cov

More...

Pf1N1B4_5000: D-glycerate transporter (predicted)
is similar to:
PaperBLAST

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

37% id,
96% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

35% id,
96% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

35% id,
96% cov

More...

Pf1N1B4_4764: 2-ketogluconate transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

30% id,
89% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

28% id,
93% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

26% id,
91% cov

More...

Pf1N1B4_397: Hexuronate transporter
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

27% id,
96% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

24% id,
94% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

25% id,
91% cov

More...

Pf1N1B4_3380: D-glucarate permease
is similar to:
PaperBLAST

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

27% id,
94% cov

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

28% id,
87% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

26% id,
91% cov

More...

Pf1N1B4_1108: D-galactarate permease
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

26% id,
93% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

25% id,
95% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

24% id,
91% cov

Pf1N1B4_2832: benzoate MFS transporter BenK
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

24% id,
96% cov

Pf1N1B4_4198: 4-hydroxybenzoate transporter
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

24% id,
91% cov

Pf1N1B4_2746: Hexuronate transporter
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

26% id,
83% cov

Pf1N1B4_3223: Major facilitator family transporter
is similar to:
PaperBLAST

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

24% id,
86% cov

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

23% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5602352-5603962 (frame -2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis
Also see hits to annotated proteins above

37% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory