Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 5 curated entries in PaperBLAST's database that match '1.1.1.122' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_19865: alcohol dehydrogenase
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

29% id,
97% cov

AO353_25145: butanediol dehydrogenase
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

28% id,
99% cov

AO353_16580: S-(hydroxymethyl)glutathione dehydrogenase
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

29% id,
96% cov

AO353_26915: NADP-dependent oxidoreductase
is similar to:
PaperBLAST

FCDH_PSESP / Q52472: D-threo-aldose 1-dehydrogenase; L-fucose dehydrogenase; EC 1.1.1.122 from Pseudomonas sp.
Q52472: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Pseudomonas sp.

27% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory