Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 30 curated entries in PaperBLAST's database that match '1.1.1.307' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_28090: dehydrogenase
is similar to:		 PaperBLAST

XYL1_PICST / P31867: NAD(P)H-dependent D-xylose reductase; XR; EC 1.1.1.307 from Scheffersomyces stipitis
XYL1 / P31867: NAD(P)H-dependent D-xylose reductase (EC 1.1.1.21; EC 1.1.1.307) from Scheffersomyces stipitis
P31867: D-xylose reductase (EC 1.1.1.307) from Scheffersomyces stipitis

 40% id,
93% cov

A0A0S2PJI4: D-xylose reductase (EC 1.1.1.307) from Spathaspora passalidarum

 39% id,
93% cov

A0MTG4: D-xylose reductase (EC 1.1.1.307) from Scheffersomyces shehatae

 36% id,
98% cov

More...

AO353_19655: 2,5-diketo-D-gluconic acid reductase
is similar to:		 PaperBLAST

A0A0S2PJI4: D-xylose reductase (EC 1.1.1.307) from Spathaspora passalidarum

 35% id,
95% cov

A0A0M4HL56: D-xylose reductase (EC 1.1.1.307) from Debaryomyces nepalensis

 33% id,
94% cov

A0A455KZK8: D-xylose reductase (EC 1.1.1.307) from Thermomyces lanuginosus

 34% id,
93% cov

More...

AO353_14720: aldo/keto reductase
is similar to:		 PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis

 37% id,
89% cov

AO353_23805: aldo/keto reductase
is similar to:		 PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis

 32% id,
95% cov

AO353_11705: L-glyceraldehyde 3-phosphate reductase
is similar to:		 PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis

 31% id,
93% cov

AO353_15230: aldo/keto reductase
is similar to:		 PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis

 32% id,
91% cov

M9RYL7: D-xylose reductase (EC 1.1.1.307) from Kazachstania humilis

 27% id,
73% cov

A9QVV8: D-xylose reductase (EC 1.1.1.307) from Candida tropicalis

 26% id,
67% cov

More...

AO353_29345: oxidoreductase
is similar to:		 PaperBLAST

XYL1_PICST / P31867: NAD(P)H-dependent D-xylose reductase; XR; EC 1.1.1.307 from Scheffersomyces stipitis
XYL1 / P31867: NAD(P)H-dependent D-xylose reductase (EC 1.1.1.21; EC 1.1.1.307) from Scheffersomyces stipitis
P31867: D-xylose reductase (EC 1.1.1.307) from Scheffersomyces stipitis

 29% id,
92% cov

S4WCW2: D-xylose reductase (EC 1.1.1.307) from Spathaspora passalidarum

 26% id,
93% cov

W5RZ21: D-xylose reductase (EC 1.1.1.307) from Rhizopus arrhizus

 26% id,
92% cov

More...

AO353_26915: NADP-dependent oxidoreductase
is similar to:		 PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis

 30% id,
87% cov

AO353_12980: aldo/keto reductase
is similar to:		 PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis

 36% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4310884-4311771 (frame -3) on CP012830
is similar to:		 PaperBLAST

A0A0S2PJI4: D-xylose reductase (EC 1.1.1.307) from Spathaspora passalidarum
Also see hits to annotated proteins above

 35% id,
98% cov

A0A0M4HL56: D-xylose reductase (EC 1.1.1.307) from Debaryomyces nepalensis
Also see hits to annotated proteins above

 34% id,
97% cov

A0A455KZK8: D-xylose reductase (EC 1.1.1.307) from Thermomyces lanuginosus
Also see hits to annotated proteins above

 34% id,
96% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory