Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 72 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_27690: isocitrate dehydrogenase
is similar to:
PaperBLAST

IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa

90% id,
100% cov

Q1XIQ8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea

77% id,
100% cov

IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli
IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli
icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli

75% id,
100% cov

More...

AO353_27695: isocitrate dehydrogenase
is similar to:
PaperBLAST

IDH_AZOVI / P16100: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Azotobacter vinelandii
icd / P16100: isocitrate dehydrogenase (NADP-dependent) (EC 1.1.1.42) from Azotobacter vinelandii

82% id,
99% cov

idh / Q8L0X8: isocitrate dehydrogenase (EC 1.1.1.42) from Chlorobium limicola

68% id,
100% cov

Q1XIQ9: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea

67% id,
100% cov

More...

AO353_28225: tartrate dehydrogenase
is similar to:
PaperBLAST

icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui

30% id,
91% cov

IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii

28% id,
92% cov

Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum

28% id,
89% cov

More...

AO353_20635: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus

28% id,
92% cov

P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus

28% id,
90% cov

Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix

27% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory