Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 44 curated entries in PaperBLAST's database that match '1.1.1.44' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_25835: 6-phosphogluconate dehydrogenase
is similar to:
PaperBLAST

Q2RIZ2: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Moorella thermoacetica

44% id,
98% cov

A0A1J5NX54: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Moorella thermoacetica

43% id,
98% cov

6PGD1_SPIOL / Q94KU1: 6-phosphogluconate dehydrogenase, decarboxylating 1; EC 1.1.1.44 from Spinacia oleracea

36% id,
64% cov

More...

AO353_22635: 3-hydroxyisobutyrate dehydrogenase
is similar to:
PaperBLAST

Q6NHC5: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Corynebacterium glutamicum

23% id,
63% cov

Q6WAT5: phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Trypanosoma cruzi

21% id,
60% cov

6PGD_TRYBB / P31072: 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Trypanosoma brucei

21% id,
58% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory