Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 10 curated entries in PaperBLAST's database that match '1.1.1.46' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 30 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_03260: epimerase
is similar to:
PaperBLAST

D4GP33: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376); L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Haloferax volcanii

35% id,
97% cov

AO353_24520: short-chain dehydrogenase
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

37% id,
92% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

36% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

36% id,
92% cov

More...

AO353_20700: oxidoreductase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
96% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
93% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

32% id,
96% cov

More...

AO353_23550: 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
is similar to:
PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
92% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

34% id,
92% cov

More...

AO353_01660: short-chain dehydrogenase
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

35% id,
90% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
91% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
91% cov

More...

AO353_01365: 3-ketoacyl-ACP reductase
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

34% id,
93% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
93% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
93% cov

More...

AO353_22325: short-chain dehydrogenase
is similar to:
PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
92% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
92% cov

More...

AO353_23170: short-chain dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

33% id,
92% cov

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

30% id,
94% cov

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

29% id,
96% cov

More...

AO353_00945: oxidoreductase
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

33% id,
92% cov

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

40% id,
73% cov

Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp.

32% id,
88% cov

AO353_11955: 3-oxoacyl-ACP reductase
is similar to:
PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

32% id,
92% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
92% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

31% id,
91% cov

More...

AO353_22915: oxidoreductase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

32% id,
90% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

32% id,
90% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

32% id,
90% cov

More...

AO353_04045: 3-ketoacyl-ACP reductase
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

29% id,
99% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
92% cov

More...

AO353_02185: short-chain dehydrogenase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
87% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
87% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

34% id,
85% cov

More...

AO353_21770: 3-hydroxybutyrate dehydrogenase
is similar to:
PaperBLAST

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
91% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
91% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

31% id,
91% cov

More...

AO353_13875: 3-ketoacyl-ACP reductase
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

30% id,
95% cov

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

31% id,
91% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
92% cov

More...

AO353_28590: oxidoreductase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
93% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
93% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
93% cov

More...

AO353_24355: sugar dehydrogenase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
91% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

30% id,
91% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
91% cov

More...

AO353_21495: short-chain dehydrogenase
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

28% id,
100% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

29% id,
91% cov

Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp.

28% id,
89% cov

More...

AO353_01060: 3-ketoacyl-ACP reductase
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

30% id,
91% cov

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

30% id,
89% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

30% id,
88% cov

More...

AO353_25690: 3-hydroxy-2-methylbutyryl-CoA dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

30% id,
92% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
91% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
91% cov

More...

AO353_23150: short-chain dehydrogenase
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

28% id,
96% cov

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

28% id,
92% cov

AO353_19325: 2,4-dienoyl-CoA reductase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
93% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
93% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
93% cov

More...

AO353_15525: serine/threonine protein kinase
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

38% id,
67% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

37% id,
67% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

36% id,
67% cov

More...

AO353_28435: AraC family transcriptional regulator
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

31% id,
80% cov

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

28% id,
79% cov

AO353_12610: 3-ketoacyl-ACP reductase
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

26% id,
95% cov

AO353_03185: short-chain dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

25% id,
90% cov

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

28% id,
72% cov

AO353_02105: 3-oxoacyl-ACP reductase
is similar to:
PaperBLAST

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

24% id,
91% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

23% id,
91% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

28% id,
74% cov

AO353_07175: short-chain dehydrogenase
is similar to:
PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
70% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

29% id,
69% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
70% cov

More...

AO353_04800: short-chain dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

28% id,
69% cov

AO353_21490: 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase
is similar to:
PaperBLAST

SMc00588: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti

22% id,
75% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 30 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4773466-4774278 (frame -3) on CP012830
is similar to:
PaperBLAST

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

31% id,
96% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

31% id,
96% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

31% id,
96% cov

More...

6227741-6228553 (frame -2) on CP012830
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

30% id,
98% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

29% id,
98% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

29% id,
98% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory