Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 6 curated entries in PaperBLAST's database that match '1.1.1.60' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_01930: 2-hydroxy-3-oxopropionate reductase
is similar to:
PaperBLAST

glxR / P77161: tartronate semialdehyde reductase 2 (EC 1.1.1.60) from Escherichia coli

65% id,
99% cov

Q8ZLV8: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) from Salmonella enterica

43% id,
98% cov

GARR_ECOLI / P0ABQ2: 2-hydroxy-3-oxopropionate reductase; Tartronate semialdehyde reductase; TSAR; EC 1.1.1.60 from Escherichia coli
YhaE / b3125: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli
garR / P0ABQ2: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli

43% id,
99% cov

AO353_17140: 2-hydroxy-3-oxopropionate reductase
is similar to:
PaperBLAST

GARR_ECOLI / P0ABQ2: 2-hydroxy-3-oxopropionate reductase; Tartronate semialdehyde reductase; TSAR; EC 1.1.1.60 from Escherichia coli
YhaE / b3125: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli
garR / P0ABQ2: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli

35% id,
97% cov

Q8ZLV8: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) from Salmonella enterica

35% id,
96% cov

glxR / P77161: tartronate semialdehyde reductase 2 (EC 1.1.1.60) from Escherichia coli

33% id,
96% cov

AO353_05985: 3-hydroxyisobutyrate dehydrogenase
is similar to:
PaperBLAST

GARR_ECOLI / P0ABQ2: 2-hydroxy-3-oxopropionate reductase; Tartronate semialdehyde reductase; TSAR; EC 1.1.1.60 from Escherichia coli
YhaE / b3125: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli
garR / P0ABQ2: tartronate semialdehyde reductase (EC 1.1.1.60) from Escherichia coli

34% id,
97% cov

Q8ZLV8: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) from Salmonella enterica

34% id,
97% cov

glxR / P77161: tartronate semialdehyde reductase 2 (EC 1.1.1.60) from Escherichia coli

33% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory