Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 22 curated entries in PaperBLAST's database that match '1.13.12.2'.

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_07420: amine oxidase
is similar to:
PaperBLAST

AO353_07420: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

100% id,
100% cov

PfGW456L13_1171: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

96% id,
100% cov

AO356_14230: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

96% id,
100% cov

More...

AO353_19485: aldolase
is similar to:
PaperBLAST

CLOR_STRRC / Q8GHB1: 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase; Bifunctional non-heme iron oxygenase; Clorobiocin biosynthesis protein CloR; EC 1.13.11.83; EC 1.13.12.23 from Streptomyces roseochromogenus
Q8GHB1: 4-hydroxy-3-prenylphenylpyruvate oxygenase (EC 1.13.11.83); 4-hydroxy-3-prenylbenzoate synthase (EC 1.13.12.23) from Streptomyces roseochromogenes

36% id,
66% cov

novR / Q9L9F0: 3-dimethylallyl-4-hydroxyphenylpyruvate oxygenase (EC 1.13.12.23; EC 1.13.11.83) from Streptomyces niveus

34% id,
68% cov

AO353_04925: aldolase
is similar to:
PaperBLAST

CLOR_STRRC / Q8GHB1: 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase; Bifunctional non-heme iron oxygenase; Clorobiocin biosynthesis protein CloR; EC 1.13.11.83; EC 1.13.12.23 from Streptomyces roseochromogenus
Q8GHB1: 4-hydroxy-3-prenylphenylpyruvate oxygenase (EC 1.13.11.83); 4-hydroxy-3-prenylbenzoate synthase (EC 1.13.12.23) from Streptomyces roseochromogenes

32% id,
73% cov

novR / Q9L9F0: 3-dimethylallyl-4-hydroxyphenylpyruvate oxygenase (EC 1.13.12.23; EC 1.13.11.83) from Streptomyces niveus

30% id,
75% cov

AO353_06260: NAD(FAD)-utilizing dehydrogenase
is similar to:
PaperBLAST

PfGW456L13_1171: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

31% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory