Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 3 curated entries in PaperBLAST's database that match '1.14.13.33' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_03895: 4-hydroxybenzoate 3-monooxygenase
is similar to:
PaperBLAST

PRAI_PAESP / C4TP09: 4-hydroxybenzoate 3-monooxygenase (NAD(P)H); 4-hydroxybenzoate 3-hydroxylase; 4HB 3-hydroxylase; EC 1.14.13.33 from Paenibacillus sp.

51% id,
100% cov

AO353_00015: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

PHHA_ASPNC / A2QGH7: p-hydroxybenzoate-m-hydroxylase A; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Aspergillus niger

32% id,
57% cov

PHHA_EMENI / C8VBV0: p-hydroxybenzoate-m-hydroxylase; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Emericella nidulans

30% id,
56% cov

PRAI_PAESP / C4TP09: 4-hydroxybenzoate 3-monooxygenase (NAD(P)H); 4-hydroxybenzoate 3-hydroxylase; 4HB 3-hydroxylase; EC 1.14.13.33 from Paenibacillus sp.

34% id,
19% cov

AO353_08755: 2-octaprenyl-6-methoxyphenyl hydroxylase
is similar to:
PaperBLAST

PHHA_EMENI / C8VBV0: p-hydroxybenzoate-m-hydroxylase; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Emericella nidulans

28% id,
16% cov

PHHA_ASPNC / A2QGH7: p-hydroxybenzoate-m-hydroxylase A; 4-hydroxybenzoate-3-monooxygenase phhA; FAD-dependent monooxygenase phhA; EC 1.14.13.33 from Aspergillus niger

28% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory