Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 108 curated entries in PaperBLAST's database that match '1.4.1.2'.

These curated entries have 87 distinct sequences.

Running ublast with E ≤ 0.01

Found 20 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_22820: NAD-glutamate dehydrogenase
is similar to:
PaperBLAST

DHE2_PSEAE / Q9HZE0: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa

84% id,
100% cov

Psest_1944: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form from Pseudomonas stutzeri

73% id,
100% cov

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

52% id,
99% cov

More...

AO353_23140: aspartate dehydrogenase
is similar to:
PaperBLAST

nadX / Q9HYA4: L-aspartate dehydrogenase monomer (EC 1.4.1.21) from Pseudomonas aeruginosa
Q9HYA4: aspartate dehydrogenase (EC 1.4.1.21) from Pseudomonas aeruginosa

79% id,
100% cov

Q46VA0: aspartate dehydrogenase (EC 1.4.1.21) from Cupriavidus necator

70% id,
99% cov

F6ALN7: aspartate dehydrogenase (EC 1.4.1.21) from Delftia sp.

63% id,
100% cov

More...

AO353_04630: ornithine cyclodeaminase
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

67% id,
98% cov

AO353_08720: glycine dehydrogenase
is similar to:
PaperBLAST

P33195: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli

66% id,
100% cov

P23378: glycine cleavage system (subunit 4/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

56% id,
93% cov

Q91W43: glycine cleavage system (EC 1.4.1.27) from Mus musculus

56% id,
92% cov

More...

AO353_03500: glycine dehydrogenase
is similar to:
PaperBLAST

P33195: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli

61% id,
100% cov

Q94B78: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Arabidopsis thaliana

57% id,
93% cov

P26969: glycine cleavage system (subunit 3/4) (EC 1.4.1.27) from Pisum sativum

58% id,
91% cov

More...

AO353_08735: glycine cleavage system protein T
is similar to:
PaperBLAST

P27248: glycine cleavage system (subunit 3/3) (EC 1.4.1.27) from Escherichia coli

56% id,
100% cov

Q5NHP0: glycine cleavage system (EC 1.4.1.27) from Francisella tularensis

49% id,
99% cov

gcvT / P54261: glycine cleavage system T-protein (EC 1.4.1.27) from Synechocystis sp.
P54261: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Synechocystis sp.

41% id,
96% cov

More...

AO353_08730: glycine cleavage system protein H
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

56% id,
95% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

45% id,
90% cov

GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii

54% id,
71% cov

More...

AO353_03495: glycine cleavage system protein H
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

51% id,
95% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

44% id,
80% cov

GCSH / P23434: glycine cleavage system H protein, mitochondrial (EC 1.4.1.27) from Homo sapiens
P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

44% id,
73% cov

More...

AO353_03510: glycine cleavage system protein T
is similar to:
PaperBLAST

P28337: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Gallus gallus

47% id,
95% cov

P48728: glycine cleavage system (subunit 2/4) (EC 1.4.1.27) from Homo sapiens

46% id,
92% cov

P49364: glycine cleavage system (subunit 1/4) (EC 1.4.1.27) from Pisum sativum

46% id,
92% cov

More...

AO353_01825: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

49% id,
91% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

48% id,
91% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

49% id,
91% cov

More...

AO353_15570: amino acid dehydrogenase
is similar to:
PaperBLAST

VDH_STRCO / Q06539: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces coelicolor
vdh / Q06539: valine dehydrogenase monomer (EC 1.4.1.23) from Streptomyces coelicolor

43% id,
91% cov

VDH_STRA4 / O69056: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces albus

43% id,
91% cov

DHPH_RHOSO / Q59771: Phenylalanine dehydrogenase; PheDH; EC 1.4.1.20 from Rhodococcus sp.

39% id,
92% cov

More...

AO353_26650: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

39% id,
96% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

39% id,
91% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

39% id,
92% cov

More...

AO353_00390: pyridine nucleotide-disulfide oxidoreductase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

31% id,
96% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

33% id,
89% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

33% id,
89% cov

More...

AO353_26970: glutathione reductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

31% id,
97% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

33% id,
89% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

31% id,
94% cov

More...

AO353_24480: glutathione reductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

30% id,
97% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

31% id,
94% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

32% id,
89% cov

More...

AO353_07650: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

26% id,
98% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

40% id,
8% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

38% id,
8% cov

AO353_26960: alkyl hydroperoxide reductase subunit F
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

27% id,
64% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

26% id,
67% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

27% id,
63% cov

More...

AO353_25185: ornithine cyclodeaminase
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

23% id,
73% cov

AO353_03895: 4-hydroxybenzoate 3-monooxygenase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

30% id,
34% cov

AO353_07710: N-methylproline demethylase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

38% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 20 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2109-3842 (frame +3) on CP012830
is similar to:
PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

31% id,
19% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory