Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_14835: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

26% id,
48% cov

AO353_00390: pyridine nucleotide-disulfide oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

28% id,
40% cov

AO353_06225: FAD-binding dehydrogenase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

28% id,
29% cov

AO353_26575: dihydropyrimidine dehydrogenase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

34% id,
19% cov

AO353_07650: sarcosine oxidase subunit alpha
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

28% id,
22% cov

AO353_07710: N-methylproline demethylase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

35% id,
17% cov

AO353_28245: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

43% id,
9% cov

AO353_14910: pyridine nucleotide-disulfide oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

32% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory