Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 5 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_23830: lactate dehydrogenase
is similar to:

dpkA / Q88GX6: Δ1-piperideine-2-carboxylate reductase (EC from Pseudomonas putida

77% id,
100% cov

AO353_04630: ornithine cyclodeaminase
is similar to:

Q485R8: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] (EC from Colwellia psychrerythraea

29% id,
80% cov

AO353_25185: ornithine cyclodeaminase
is similar to:

CRYM / Q14894: ketimine reductase monomer (EC; EC from Homo sapiens

31% id,
72% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory