Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 14 curated entries in PaperBLAST's database that match '1.5.1.34' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_15440: dihydropteridine reductase
is similar to:
PaperBLAST

Hmp / b2552: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli
hmp / P24232: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli

41% id,
100% cov

AO353_10545: ferredoxin
is similar to:
PaperBLAST

Hmp / b2552: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli
hmp / P24232: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli

27% id,
55% cov

AO353_07675: ferredoxin
is similar to:
PaperBLAST

Hmp / b2552: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli
hmp / P24232: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli

26% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory