Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 38 curated entries in PaperBLAST's database that match '2.3.3.13' as complete word(s).

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_15925: 2-isopropylmalate synthase
is similar to:
PaperBLAST

LEU1_CORGL / P42455: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Corynebacterium glutamicum

55% id,
92% cov

LEU1_YEAST / P06208: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Saccharomyces cerevisiae

51% id,
94% cov

LEU9_YEAST / Q12166: 2-isopropylmalate synthase 2, mitochondrial; Alpha-IPM synthase 2; Alpha-isopropylmalate synthase 2; Alpha-isopropylmalate synthase II; EC 2.3.3.13 from Saccharomyces cerevisiae

50% id,
95% cov

More...

AO353_24260: hypothetical protein
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

37% id,
78% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

33% id,
80% cov

A0A0G2T6D7: 2-isopropylmalate synthase (EC 2.3.3.13) from Solanum pennellii

32% id,
82% cov

More...

AO353_10025: pyruvate carboxylase subunit B
is similar to:
PaperBLAST

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

23% id,
83% cov

Q72JC9: 2-isopropylmalate synthase (EC 2.3.3.13) from Thermus thermophilus

25% id,
48% cov

AO353_05005: hypothetical protein
is similar to:
PaperBLAST

LEU1_CORGL / P42455: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Corynebacterium glutamicum

55% id,
9% cov

LEU1_YEAST / P06208: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Saccharomyces cerevisiae

55% id,
9% cov

LEU1_MYCTO / P9WQB2: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Mycobacterium tuberculosis
LEU1_MYCTU / P9WQB3: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Mycobacterium tuberculosis
P9WQB3: 2-isopropylmalate synthase (EC 2.3.3.13) from Mycobacterium tuberculosis

51% id,
9% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3514058-3515782 (frame -2) on CP012830
is similar to:
PaperBLAST

LEU1_CORGL / P42455: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Corynebacterium glutamicum
Also see hits to annotated proteins above

54% id,
95% cov

LEU1_MYCTO / P9WQB2: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Mycobacterium tuberculosis
LEU1_MYCTU / P9WQB3: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Mycobacterium tuberculosis
P9WQB3: 2-isopropylmalate synthase (EC 2.3.3.13) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

53% id,
89% cov

K4C627: 2-isopropylmalate synthase (EC 2.3.3.13) from Solanum lycopersicum
Also see hits to annotated proteins above

27% id,
98% cov

1102943-1103233 (frame -2) on CP012830
is similar to:
PaperBLAST

LEU1_YEAST / P06208: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

46% id,
13% cov

LEU9_YEAST / Q12166: 2-isopropylmalate synthase 2, mitochondrial; Alpha-IPM synthase 2; Alpha-isopropylmalate synthase 2; Alpha-isopropylmalate synthase II; EC 2.3.3.13 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

43% id,
13% cov

LEU1_CORGL / P42455: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Corynebacterium glutamicum
Also see hits to annotated proteins above

51% id,
10% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory