Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 35 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_07560: malate synthase G
is similar to:
PaperBLAST

Psest_0354: Malate synthase G (EC 2.3.3.9) from Pseudomonas stutzeri

81% id,
100% cov

MASZ_MYCTO / P9WK16: Malate synthase G; EC 2.3.3.9 from Mycobacterium tuberculosis
MASZ_MYCTU / P9WK17: Malate synthase G; EC 2.3.3.9 from Mycobacterium tuberculosis
glcB / P9WK17: malate synthase G (EC 2.3.3.9) from Mycobacterium tuberculosis
P9WK17: malate synthase (EC 2.3.3.9) from Mycobacterium tuberculosis

67% id,
98% cov

MASZ_MYCLB / B8ZSN3: Malate synthase G; EC 2.3.3.9 from Mycobacterium leprae

65% id,
100% cov

More...

AO353_27735: isocitrate lyase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

57% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory