Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 197 curated entries in PaperBLAST's database that match '2.4.2.1'.

These curated entries have 142 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_05115: ATP phosphoribosyltransferase
is similar to:
PaperBLAST

AO353_05115: ATP phosphoribosyltransferase (EC 2.4.2.17) from Pseudomonas fluorescens

100% id,
100% cov

PfGW456L13_5001: ATP phosphoribosyltransferase (EC 2.4.2.17) from Pseudomonas fluorescens

100% id,
100% cov

Pf1N1B4_1067: ATP phosphoribosyltransferase (EC 2.4.2.17) from Pseudomonas fluorescens

97% id,
100% cov

More...

AO353_09245: orotate phosphoribosyltransferase
is similar to:
PaperBLAST

PYRE_SALTY / P08870: Orotate phosphoribosyltransferase; OPRT; OPRTase; EC 2.4.2.10 from Salmonella typhimurium

70% id,
100% cov

PYRE_ECOLI / P0A7E3: Orotate phosphoribosyltransferase; OPRT; OPRTase; EC 2.4.2.10 from Escherichia coli
PyrE / b3642: orotate phosphoribosyltransferase (EC 2.4.2.10) from Escherichia coli
pyrE / P0A7E3: orotate phosphoribosyltransferase (EC 2.4.2.10) from Escherichia coli

69% id,
100% cov

PYRE_YEAST / P13298: Orotate phosphoribosyltransferase 1; OPRT 1; OPRTase 1; EC 2.4.2.10 from Saccharomyces cerevisiae
URA5 / P13298: orotate phosphoribosyltransferase (EC 2.4.2.10) from Saccharomyces cerevisiae
P13298: orotate phosphoribosyltransferase (EC 2.4.2.10) from Saccharomyces cerevisiae

49% id,
97% cov

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AO353_20690: amidophosphoribosyltransferase
is similar to:
PaperBLAST

PUR1_ECOLI / P0AG16: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPATase; EC 2.4.2.14 from Escherichia coli
Ade / b2312: amidophosphoribosyltransferase (EC 2.4.2.14) from Escherichia coli
purF / P0AG16: amidophosphoribosyltransferase (EC 2.4.2.14) from Escherichia coli

63% id,
100% cov

PUR1_YEAST / P04046: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; EC 2.4.2.14 from Saccharomyces cerevisiae
ADE4 / P04046: phosphoribosylpyrophosphate amidotransferase (EC 2.4.2.14) from Saccharomyces cerevisiae

54% id,
99% cov

ade4 / RF|NP_594961.1: amidophosphoribosyltransferase Ade4; EC 2.4.2.14 from Schizosaccharomyces pombe

52% id,
95% cov

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AO353_14225: laccase
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli
yfiH / P33644: purine nucleoside phosphorylase YfiH (EC 2.4.2.1; EC 2.4.2.28; EC 3.5.4.4; EC 1.10.3.2) from Escherichia coli

57% id,
100% cov

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

34% id,
93% cov

PURNU_BACTN / Q89ZI8: Purine nucleoside phosphorylase BT_4389; Adenosine deaminase BT_4389; S-methyl-5'-thioadenosine phosphorylase BT_4389; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Bacteroides thetaiotaomicron

30% id,
93% cov

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AO353_19295: hypothetical protein
is similar to:
PaperBLAST

PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC 2.4.2.1; EC 2.4.2.2 from Escherichia coli
PpnP / b0391: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
ppnP / P0C037: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.2; EC 2.4.2.1) from Escherichia coli

55% id,
99% cov

AO353_05520: nicotinate-nucleotide pyrophosphorylase
is similar to:
PaperBLAST

NADC_SALTY / P30012: Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Quinolinate phosphoribosyltransferase [decarboxylating]; QAPRTase; EC 2.4.2.19 from Salmonella typhimurium

57% id,
95% cov

NADC_ECOLI / P30011: Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Quinolinate phosphoribosyltransferase [decarboxylating]; QAPRTase; EC 2.4.2.19 from Escherichia coli
NadC / b0109: quinolinate phosphoribosyltransferase (decarboxylating) (EC 2.4.2.19) from Escherichia coli
nadC: nicotinate-nucleotide diphosphorylase, carboxylating; EC 2.4.2.19 from Escherichia coli
nadC / P30011: quinolinate phosphoribosyltransferase (decarboxylating) (EC 2.4.2.19) from Escherichia coli

56% id,
95% cov

Q5XBL7: nicotinate-nucleotide diphosphorylase (carboxylating) (EC 2.4.2.19) from Streptococcus pyogenes

41% id,
96% cov

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AO353_07215: anthranilate phosphoribosyltransferase
is similar to:
PaperBLAST

TRPD_XANCP / Q8PD71: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Xanthomonas campestris

47% id,
97% cov

TRPD_THET8 / Q5SH88: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus
TRPD_THETH / P83827: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus

42% id,
99% cov

Q9YGB4: anthranilate phosphoribosyltransferase (EC 2.4.2.18) from Thermococcus kodakarensis

37% id,
99% cov

More...

AO353_05590: triosephosphate isomerase
is similar to:
PaperBLAST

P00941: purine-nucleoside phosphorylase (EC 2.4.2.1) from Homo sapiens

45% id,
96% cov

AO353_00450: 5'-methylthioadenosine phosphorylase
is similar to:
PaperBLAST

PNPH_THEKO / Q5JJB8: Probable 6-oxopurine nucleoside phosphorylase; Purine nucleoside phosphorylase; PNP; EC 2.4.2.1 from Thermococcus kodakarensis
TK1482 / Q5JJB8: guanosine phosphorylase (EC 2.4.2.15) from Thermococcus kodakarensis

42% id,
93% cov

PNPH_PYRFU / Q8U2I1: 6-oxopurine nucleoside phosphorylase; Purine nucleoside phosphorylase; PNP; PfPNP; EC 2.4.2.1 from Pyrococcus furiosus
Q8U2I1: purine-nucleoside phosphorylase (EC 2.4.2.1) from Pyrococcus furiosus

42% id,
92% cov

salT / B0L7E7: chloro-purine nucleoside phosphorylase (EC 2.4.2.1) from Salinispora tropica
B0L7E7: purine-nucleoside phosphorylase (EC 2.4.2.1) from Salinispora tropica

44% id,
86% cov

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AO353_00665: adenine phosphoribosyltransferase
is similar to:
PaperBLAST

Q8DTV2: orotate phosphoribosyltransferase (EC 2.4.2.10) from Streptococcus mutans

26% id,
80% cov

AO353_27615: hypothetical protein
is similar to:
PaperBLAST

TRPD_SACS2 / P50384: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Saccharolobus solfataricus
P50384: anthranilate phosphoribosyltransferase (EC 2.4.2.18) from Saccharolobus solfataricus

24% id,
63% cov

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

22% id,
42% cov

AO353_10370: glucosamine--fructose-6-phosphate aminotransferase
is similar to:
PaperBLAST

PUR1_HUMAN / Q06203: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPAT; EC 2.4.2.14 from Homo sapiens
PPAT / Q06203: Amidophosphoribosyltransferase (EC 2.4.2.14) from Homo sapiens
Q06203: amidophosphoribosyltransferase (EC 2.4.2.14); pantetheine-phosphate adenylyltransferase (EC 2.7.7.3) from Homo sapiens

28% id,
51% cov

PUR1_BACSU / P00497: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPATase; EC 2.4.2.14 from Bacillus subtilis

30% id,
45% cov

PUR1_RAT / P35433: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPAT; EC 2.4.2.14 from Rattus norvegicus

27% id,
50% cov

More...

AO353_07220: anthranilate synthase
is similar to:
PaperBLAST

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

42% id,
34% cov

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

42% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory