Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 3 curated entries in PaperBLAST's database that match '2.6.1.113'.

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_08585: aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

78% id,
98% cov

AO353_15040: aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

51% id,
98% cov

AO353_06085: omega amino acid--pyruvate aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

37% id,
97% cov

AO353_08045: adenosylmethionine-8-amino-7-oxononanoate aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

33% id,
93% cov

AO353_28215: 4-aminobutyrate aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

30% id,
98% cov

AO353_15640: acetylornithine aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

30% id,
91% cov

AO353_01090: hypothetical protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

30% id,
91% cov

AO353_16245: adenosylmethionine-8-amino-7-oxononanoate aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

28% id,
91% cov

AO353_11510: 4-aminobutyrate aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

28% id,
89% cov

AO353_10500: acetylornithine aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

28% id,
90% cov

AO353_03025: acetylornithine aminotransferase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

27% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory