Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_20835: ribokinase
is similar to:
PaperBLAST

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

100% id,
100% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

85% id,
100% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

81% id,
100% cov

More...

AO353_05480: 1-phosphofructokinase
is similar to:
PaperBLAST

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

28% id,
93% cov

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

25% id,
97% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

25% id,
85% cov

More...

AO353_26875: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

BT2803: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

28% id,
83% cov

BT2804: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

24% id,
91% cov

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

24% id,
92% cov

More...

AO353_12970: heptose 1-phosphate adenyltransferase
is similar to:
PaperBLAST

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

26% id,
87% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

24% id,
83% cov

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

32% id,
46% cov

More...

AO353_25910: fructokinase
is similar to:
PaperBLAST

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

24% id,
87% cov

AO353_21745: ketodeoxygluconokinase
is similar to:
PaperBLAST

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

29% id,
49% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

35% id,
37% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

34% id,
36% cov

More...

AO353_08490: ribose 5-phosphate isomerase
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

33% id,
42% cov

AO353_21335: 5-dehydro-2-deoxygluconokinase
is similar to:
PaperBLAST

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

26% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory