Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 56 curated entries in PaperBLAST's database that match '2.7.2.4' as complete word(s).

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_02975: aspartate kinase
is similar to:
PaperBLAST

AK_PSEFS / C3JXY0: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas fluorescens

95% id,
100% cov

AK_PSEPK / Q88EI9: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas putida

94% id,
100% cov

AKLYS_PSEU5 / A4VJB4: Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 from Pseudomonas stutzeri

91% id,
99% cov

More...

AO353_09035: diaminopimelate decarboxylase
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

35% id,
45% cov

AO353_16470: uridylate kinase
is similar to:
PaperBLAST

AK2_BACSU / P08495: Aspartokinase 2; Aspartate kinase 2; Aspartokinase II; EC 2.7.2.4 from Bacillus subtilis
lysC / GB|CAA99580.1: aspartate kinase 2; EC 2.7.2.4 from Bacillus subtilis
lysCα / P08495: aspartate kinase II α subunit (EC 2.7.2.4) from Bacillus subtilis
lysCβ / P08495: aspartate kinase II β subunit (EC 2.7.2.4) from Bacillus subtilis
P08495: aspartate kinase (EC 2.7.2.4) from Bacillus subtilis

23% id,
53% cov

AK_PSEFS / C3JXY0: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas fluorescens

29% id,
39% cov

AK_CORFL / P41398: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens
lysC / GB|AAA23293.1: aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens

25% id,
45% cov

More...

AO353_04355: homoserine dehydrogenase
is similar to:
PaperBLAST

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

27% id,
43% cov

AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana

30% id,
27% cov

AO353_14115: gamma-glutamyl kinase
is similar to:
PaperBLAST

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli

45% id,
5% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

939284-940702 (frame -2) on CP012830
is similar to:
PaperBLAST

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

24% id,
43% cov

AKH2_ARATH / O81852: Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic; AK-HD 2; AK-HSDH 2; Beta-aspartyl phosphate homoserine 2; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana
Also see hits to annotated proteins above

25% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory