Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 331 curated entries in PaperBLAST's database that match '3.2.1.23' as complete word(s).

These curated entries have 255 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_17375: beta-D-glucoside glucohydrolase
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

29% id,
79% cov

AO353_17025: beta-agarase
is similar to:
PaperBLAST

EFB02686.1: β-galactosidase (VadG925;Vvad_PD3900) (EC 3.2.1.23)

35% id,
24% cov

EFB02686.1: β-galactosidase (VadG925;Vvad_PD3900) (EC 3.2.1.23)

31% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory