Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 241 curated entries in PaperBLAST's database that match '3.2.1.26' as complete word(s).

These curated entries have 195 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_25135: glycosyl hydrolase family 32
is similar to:
PaperBLAST

AAA24499.1: invertase (RafD) (EC 3.2.1.26)

47% id,
100% cov

CAA57219.1: invertase (CscA) (EC 3.2.1.26)

45% id,
100% cov

AAC33123.1: invertase (CscA) (EC 3.2.1.26)
AAP79503.1: sucrose hydrolase (CscA) (EC 3.2.1.26)

46% id,
96% cov

More...

AO353_04255: sucrase
is similar to:
PaperBLAST

INVB_ZYMMA / F8DT27: Extracellular sucrase; Beta-fructofuranosidase; Invertase; Protein B46; Saccharase; EC 3.2.1.26 from Zymomonas mobilis
AAV88999.1: invertase B (SacC;InvB;ZMO0375;SucE3) (EC 3.2.1.26)
AAA61488.1: invertase B (SacC,InvB,SucE3) (EC 3.2.1.26)

46% id,
95% cov

BAD18121.1: β-fructofuranosidase (Bff) (EC 2.4.1.10|3.2.1.26)

39% id,
81% cov

BAB72022.1: β-fructofuranosidase (Bff;BffA;ArFFase) (EC 3.2.1.26)

40% id,
77% cov

AO353_22940: alpha-amylase
is similar to:
PaperBLAST

ams / G4T024: sucrose β-fructofuranosidase (EC 3.2.1.26; EC 2.4.1.4) from Methylotuvimicrobium alcaliphilum

27% id,
55% cov

AO353_15985: trehalose-6-phosphate hydrolase
is similar to:
PaperBLAST

ams / G4T024: sucrose β-fructofuranosidase (EC 3.2.1.26; EC 2.4.1.4) from Methylotuvimicrobium alcaliphilum

34% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3531538-3533316 (frame +1) on CP012830
is similar to:
PaperBLAST

ams / G4T024: sucrose β-fructofuranosidase (EC 3.2.1.26; EC 2.4.1.4) from Methylotuvimicrobium alcaliphilum
Also see hits to annotated proteins above

30% id,
38% cov

4441608-4442093 (frame -1) on CP012830
is similar to:
PaperBLAST

AAA67876.1: invertase (LevJ) (EC 3.2.1.26)
Also see hits to annotated proteins above

34% id,
11% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory