Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 37 curated entries in PaperBLAST's database that match '3.5.99.6' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_04455: iron dicitrate transport regulator FecR
is similar to:
PaperBLAST

AO353_04455: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens

100% id,
100% cov

PfGW456L13_4831: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens

91% id,
99% cov

BPHYT_RS02735: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Burkholderia phytofirmans

66% id,
100% cov

More...

AO353_10370: glucosamine--fructose-6-phosphate aminotransferase
is similar to:
PaperBLAST

Ga0059261_1644: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Sphingomonas koreensis

31% id,
98% cov

PfGW456L13_4831: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Pseudomonas fluorescens

31% id,
94% cov

GLMD_THEKO / Q5JDU3: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; EC 3.5.99.6 from Thermococcus kodakarensis
glmD / Q5JDU3: archaeal glucosamine-6-phosphate deaminase subunit (EC 3.5.99.6) from Thermococcus kodakarensis

29% id,
99% cov

More...

AO353_23745: acetylglucosaminylphosphatidylinositol deacetylase
is similar to:
PaperBLAST

CA265_RS21925: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Pedobacter sp.

25% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory