Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 3 curated entries in PaperBLAST's database that match '3.7.1.9' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_25150: acetoin dehydrogenase
is similar to:
PaperBLAST

G3KFX4: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas sp.

30% id,
89% cov

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

30% id,
89% cov

AO353_04920: alpha/beta hydrolase
is similar to:
PaperBLAST

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

27% id,
93% cov

G3KFX4: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas sp.

31% id,
68% cov

AO353_16220: alpha/beta hydrolase
is similar to:
PaperBLAST

G3KFX4: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas sp.

23% id,
92% cov

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

27% id,
66% cov

AO353_21875: proline iminopeptidase
is similar to:
PaperBLAST

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

30% id,
59% cov

G3KFX4: 2-hydroxymuconate-6-semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas sp.

31% id,
41% cov

AO353_12410: poly(3-hydroxyalkanoate) depolymerase
is similar to:
PaperBLAST

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

41% id,
23% cov

AO353_28440: alpha/beta hydrolase
is similar to:
PaperBLAST

XYLF_PSEPU / P23106: 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC 3.7.1.9 from Pseudomonas putida
xylF / P23106: 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) from Pseudomonas putida

38% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory