Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N2E3 (pseudo3_N2E3)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N2E3, or try another query

AO353_23560: lysine decarboxylase
is similar to:
PaperBLAST

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

36% id,
91% cov

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

35% id,
91% cov

Q5ZH57: ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni

34% id,
95% cov

More...

AO353_05445: ornithine decarboxylase
is similar to:
PaperBLAST

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

32% id,
90% cov

Q58P26: ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica

30% id,
94% cov

DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis

31% id,
87% cov

More...

AO353_09035: diaminopimelate decarboxylase
is similar to:
PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

28% id,
80% cov

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

26% id,
82% cov

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

26% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory